Click here to switch to the map view.

The map label for this gene is 86748334

Identifier: 86748334

GI number: 86748334

Start: 1382445

End: 1383215

Strand: Reverse

Name: 86748334

Synonym: RPB_1209

Alternate gene names: NA

Gene position: 1383215-1382445 (Counterclockwise)

Preceding gene: 86748335

Following gene: 86748333

Centisome position: 25.94

GC content: 70.95

Gene sequence:

>771_bases
ATGACTGACCCCGAGATCCCCGTGACCGAAGACGAACTGCACGCCTATGTCGACGGCGAACTGCCGGCCGAGCGGCGCGG
CGACGTCGAGGCTTGGCTGGCGACGCATCCGGCGGACGCCGAACGCGTCGCGTCGTGGCGCGCGATGGCCGAGGCGCTGC
ACGCCCGCTACGACCGGGTGCTCGACGAGCCGGTGCCGCCGCGGCTGCAACTCGCCCGGCTGGAGAGCCCACCGCGACGC
TGGATCGCCGGCGCCATCGCGGCGACGCTGGCGGCGTTCATCGCCGGCGGCGGCGCGGGCTGGTTCGCACACGGCGCGGC
GGCAACGCCGAACGCCTTCCGCAGCTTCACCGTCGATGCGCTCGATGCGCACCGGCTCTACGTCGTCGAGGTTCGCCACC
CCGTCGAGGTCGAGGGCTCCGAACGCGCACATCTGCAGCAATGGCTGTCGAAGCGCGTCGGTTATCCGGTCAAGGCGCCC
GAACTCGAAGGCAGTGGGCTGAAGCTGATCGGCGGGCGGCTGCTGCCCGGGCCCGACGCCCCGGCGGCGTTCCTGATGTA
CGAGAGCGCCAACGGCGAGCGCTTCACGCTGTACACCTCCCGTGCCGATACCGACACGACGCAGATGCGCTACGCCAGCG
ATCACCGCGACGGCGCGATGTTCTGGGCCGATCGCGGCGTCGGCTACGTGCTGTCGGGTCCGATCGACAAAGAGCGACTG
CGCCAGGTGGCGCAGCAGGTCTACGCGCAGACCGACAGCAACGGCGGTTAG

Upstream 100 bases:

>100_bases
GGATGCGCCGCAACACACGGGCCCATCCTTCGAGGCCGTCGCTGCGCGACGGCTCCTCAGGATGACGCCGATCATGTTTT
GACGCTGAAGAGTTGTGCCC

Downstream 100 bases:

>100_bases
CATGATGCCGAAAAGTGGGTGCCGGTTTTCGGAAGAGATCCTGATCCGGTCAGCAATATCCGGTCAGCAATTAGTTCGAG
CCGGCAACCGTTATTGACCC

Product: anti-sigma factor

Products: NA

Alternate protein names: Transmembrane Transcriptional Regulator; Anti-Sigma Factor; Transmembrane Protein; Transmembrane Regulator; PrtR Transmembrane Transcriptional Regulator; Transcriptional Regulator; Sigma Factor Regulator PrtR; Transmembrane Regulator PrtR; Transmembrane Transcription Regulator

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTDPEIPVTEDELHAYVDGELPAERRGDVEAWLATHPADAERVASWRAMAEALHARYDRVLDEPVPPRLQLARLESPPRR
WIAGAIAATLAAFIAGGGAGWFAHGAAATPNAFRSFTVDALDAHRLYVVEVRHPVEVEGSERAHLQQWLSKRVGYPVKAP
ELEGSGLKLIGGRLLPGPDAPAAFLMYESANGERFTLYTSRADTDTTQMRYASDHRDGAMFWADRGVGYVLSGPIDKERL
RQVAQQVYAQTDSNGG

Sequences:

>Translated_256_residues
MTDPEIPVTEDELHAYVDGELPAERRGDVEAWLATHPADAERVASWRAMAEALHARYDRVLDEPVPPRLQLARLESPPRR
WIAGAIAATLAAFIAGGGAGWFAHGAAATPNAFRSFTVDALDAHRLYVVEVRHPVEVEGSERAHLQQWLSKRVGYPVKAP
ELEGSGLKLIGGRLLPGPDAPAAFLMYESANGERFTLYTSRADTDTTQMRYASDHRDGAMFWADRGVGYVLSGPIDKERL
RQVAQQVYAQTDSNGG
>Mature_255_residues
TDPEIPVTEDELHAYVDGELPAERRGDVEAWLATHPADAERVASWRAMAEALHARYDRVLDEPVPPRLQLARLESPPRRW
IAGAIAATLAAFIAGGGAGWFAHGAAATPNAFRSFTVDALDAHRLYVVEVRHPVEVEGSERAHLQQWLSKRVGYPVKAPE
LEGSGLKLIGGRLLPGPDAPAAFLMYESANGERFTLYTSRADTDTTQMRYASDHRDGAMFWADRGVGYVLSGPIDKERLR
QVAQQVYAQTDSNGG

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28072; Mature: 27940

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPEIPVTEDELHAYVDGELPAERRGDVEAWLATHPADAERVASWRAMAEALHARYDRV
CCCCCCCCCHHHHHEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LDEPVPPRLQLARLESPPRRWIAGAIAATLAAFIAGGGAGWFAHGAAATPNAFRSFTVDA
HCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHEEHCC
LDAHRLYVVEVRHPVEVEGSERAHLQQWLSKRVGYPVKAPELEGSGLKLIGGRLLPGPDA
CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCC
PAAFLMYESANGERFTLYTSRADTDTTQMRYASDHRDGAMFWADRGVGYVLSGPIDKERL
CEEEEEEECCCCCEEEEEECCCCCCHHHHHECCCCCCCEEEEECCCCCEEEECCCCHHHH
RQVAQQVYAQTDSNGG
HHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDPEIPVTEDELHAYVDGELPAERRGDVEAWLATHPADAERVASWRAMAEALHARYDRV
CCCCCCCCHHHHHEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LDEPVPPRLQLARLESPPRRWIAGAIAATLAAFIAGGGAGWFAHGAAATPNAFRSFTVDA
HCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHEEHCC
LDAHRLYVVEVRHPVEVEGSERAHLQQWLSKRVGYPVKAPELEGSGLKLIGGRLLPGPDA
CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEECCCCCC
PAAFLMYESANGERFTLYTSRADTDTTQMRYASDHRDGAMFWADRGVGYVLSGPIDKERL
CEEEEEEECCCCCEEEEEECCCCCCHHHHHECCCCCCCEEEEECCCCCEEEECCCCHHHH
RQVAQQVYAQTDSNGG
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA