BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is cbpA [H]

Identifier: 86748332

GI number: 86748332

Start: 1380179

End: 1381150

Strand: Direct

Name: cbpA [H]

Synonym: RPB_1207

Alternate gene names: 86748332

Gene position: 1380179-1381150 (Clockwise)

Preceding gene: 86748331

Following gene: 86748336

Centisome position: 25.89

GC content: 68.11

Gene sequence:

>972_bases
ATGCGCGACCCCTATGAGGTCCTGGGGGTGCAGCGGGACGCCAGCGCTTCGGCGATCAAGAGCGCCTACCGCAAGCTGGC
CAAGAAGCATCACCCCGACGCCAACGCCAACGACCCGAAGGCCGCCGCCCGCTTCGCCGAAGTCAATTCGGCCAATGAGA
TCATCGGCGACGAGGCCAAACGCAAGCAATACGACCGCGGCGAGATCGACGCCGAGGGCAAGCCGCGATTCCAGGGCTTC
CCCGGTGGCGGTGGCGCGCGCGGCGGTCGCGCTGGCGGCGGCGGTTTCGAGCAACACAACTTCCGTAACGCTGGCGGCGG
CTTCGCGGGTGGCGGCGGGGCCGGCTTCGAAGATATCCTGAACTCGATGTTCGGCGGCGCGGCCGGCATGCGCGGTGGTC
CGCGCGGCGGCGCGCAGGGATTCGATTTCGACACCGGCGGCTTCGCCCCGGACCTCGACCAGACTGTCGCGATGACCGTG
ACGCTGGAAGAGGCGGCCAAGGGCACCGAAAAGCGCGTCCGGCTGCCGACCGGCAAGGAGCTCAACGTCAAGATTCCGGC
GGGCGTCAGCTCCGGCCAGCAGATCCGGCTGAAAGGTCAGGGCGAAAGTGCGCCCGGCCACCGTCCCGGCGATCTGCTGA
TCACCGTTAACTACGCCGCGCATCCCCACTTCAAGGTCGACGGCAACGATCTGCGGCTCGAACTGCCGATTACGCTGTAC
GAGGCGGTGCTCGGCGCCAAGGTACGGGTGCCGACGCTCACCGGCGCGATCGAACTGTCGATCCCGAAGAACACCTCGAG
CGGGCGGACCTTCCGGCTCAAGGGCAAGGGGCTGCCCAAGAACGGCGCGGCGGGCGACCTGTTCGTCACCACGCGGATCG
TGCTGCCGGACGGTCATGACGCCGAGCTGGAAGCGCTGATGCAGAAGTGGCGCGACGGTCACCCGTATCACCCGCGGAGC
GACTTGGCCTGA

Upstream 100 bases:

>100_bases
ATGCGGCCGATAGCGGTTGCAAAAGCGACACAAACATCCCAGATGAAGCGCCATTGGGCGGTCTGCCCATCATGTGAATT
CCTTCAAGGAGACGAGACGG

Downstream 100 bases:

>100_bases
GCCTACTCGTCATTGCGAGGAGCGAAGCGACGACGCAATCCGGCCCGGTGCACTGAGCTGGATTGCTTCGCTTCGCTCGC
AATGACGGCTGGTGCGGCGG

Product: heat shock protein DnaJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MRDPYEVLGVQRDASASAIKSAYRKLAKKHHPDANANDPKAAARFAEVNSANEIIGDEAKRKQYDRGEIDAEGKPRFQGF
PGGGGARGGRAGGGGFEQHNFRNAGGGFAGGGGAGFEDILNSMFGGAAGMRGGPRGGAQGFDFDTGGFAPDLDQTVAMTV
TLEEAAKGTEKRVRLPTGKELNVKIPAGVSSGQQIRLKGQGESAPGHRPGDLLITVNYAAHPHFKVDGNDLRLELPITLY
EAVLGAKVRVPTLTGAIELSIPKNTSSGRTFRLKGKGLPKNGAAGDLFVTTRIVLPDGHDAELEALMQKWRDGHPYHPRS
DLA

Sequences:

>Translated_323_residues
MRDPYEVLGVQRDASASAIKSAYRKLAKKHHPDANANDPKAAARFAEVNSANEIIGDEAKRKQYDRGEIDAEGKPRFQGF
PGGGGARGGRAGGGGFEQHNFRNAGGGFAGGGGAGFEDILNSMFGGAAGMRGGPRGGAQGFDFDTGGFAPDLDQTVAMTV
TLEEAAKGTEKRVRLPTGKELNVKIPAGVSSGQQIRLKGQGESAPGHRPGDLLITVNYAAHPHFKVDGNDLRLELPITLY
EAVLGAKVRVPTLTGAIELSIPKNTSSGRTFRLKGKGLPKNGAAGDLFVTTRIVLPDGHDAELEALMQKWRDGHPYHPRS
DLA
>Mature_323_residues
MRDPYEVLGVQRDASASAIKSAYRKLAKKHHPDANANDPKAAARFAEVNSANEIIGDEAKRKQYDRGEIDAEGKPRFQGF
PGGGGARGGRAGGGGFEQHNFRNAGGGFAGGGGAGFEDILNSMFGGAAGMRGGPRGGAQGFDFDTGGFAPDLDQTVAMTV
TLEEAAKGTEKRVRLPTGKELNVKIPAGVSSGQQIRLKGQGESAPGHRPGDLLITVNYAAHPHFKVDGNDLRLELPITLY
EAVLGAKVRVPTLTGAIELSIPKNTSSGRTFRLKGKGLPKNGAAGDLFVTTRIVLPDGHDAELEALMQKWRDGHPYHPRS
DLA

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI6631085, Length=343, Percent_Identity=29.4460641399417, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI194328760, Length=342, Percent_Identity=27.4853801169591, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI194328758, Length=342, Percent_Identity=27.4853801169591, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI201862518, Length=353, Percent_Identity=27.4787535410765, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI201862587, Length=353, Percent_Identity=27.4787535410765, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI4504511, Length=279, Percent_Identity=29.0322580645161, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI56549115, Length=353, Percent_Identity=27.4787535410765, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI39204547, Length=321, Percent_Identity=27.7258566978193, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI5453690, Length=341, Percent_Identity=27.5659824046921, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI205360840, Length=169, Percent_Identity=36.094674556213, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI205360838, Length=169, Percent_Identity=36.094674556213, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI7706495, Length=64, Percent_Identity=53.125, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI194328762, Length=306, Percent_Identity=24.8366013071895, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI47777312, Length=129, Percent_Identity=41.8604651162791, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI29126218, Length=62, Percent_Identity=51.6129032258064, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=48.3870967741936, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI56687498, Length=64, Percent_Identity=51.5625, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=53.7313432835821, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI24308127, Length=65, Percent_Identity=46.1538461538462, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=53.7313432835821, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI23503241, Length=135, Percent_Identity=37.037037037037, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI9558755, Length=215, Percent_Identity=31.6279069767442, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787235, Length=331, Percent_Identity=34.441087613293, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1786197, Length=142, Percent_Identity=40.1408450704225, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17534355, Length=334, Percent_Identity=30.2395209580838, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17507263, Length=329, Percent_Identity=27.355623100304, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115532378, Length=105, Percent_Identity=38.0952380952381, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI212645553, Length=65, Percent_Identity=50.7692307692308, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17554644, Length=94, Percent_Identity=43.6170212765958, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17554900, Length=100, Percent_Identity=40, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115532476, Length=64, Percent_Identity=48.4375, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553096, Length=63, Percent_Identity=46.031746031746, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17553098, Length=63, Percent_Identity=46.031746031746, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=344, Percent_Identity=28.7790697674419, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6323813, Length=144, Percent_Identity=42.3611111111111, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6322388, Length=118, Percent_Identity=36.4406779661017, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323870, Length=70, Percent_Identity=44.2857142857143, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323119, Length=64, Percent_Identity=50, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322194, Length=62, Percent_Identity=45.1612903225806, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24658562, Length=343, Percent_Identity=31.1953352769679, Blast_Score=114, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24658555, Length=343, Percent_Identity=31.1953352769679, Blast_Score=114, Evalue=9e-26,
Organism=Drosophila melanogaster, GI19920464, Length=322, Percent_Identity=28.2608695652174, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI85726398, Length=356, Percent_Identity=28.3707865168539, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI18858081, Length=343, Percent_Identity=28.5714285714286, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI45549272, Length=371, Percent_Identity=25.8760107816712, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI45552813, Length=371, Percent_Identity=25.8760107816712, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI45552811, Length=371, Percent_Identity=25.8760107816712, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24646562, Length=350, Percent_Identity=24.2857142857143, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24646560, Length=350, Percent_Identity=24.2857142857143, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24646558, Length=350, Percent_Identity=24.2857142857143, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24646556, Length=350, Percent_Identity=24.2857142857143, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357547, Length=350, Percent_Identity=24.2857142857143, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24668523, Length=61, Percent_Identity=49.1803278688525, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17737735, Length=62, Percent_Identity=48.3870967741936, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574723, Length=62, Percent_Identity=48.3870967741936, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34044; Mature: 34044

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPYEVLGVQRDASASAIKSAYRKLAKKHHPDANANDPKAAARFAEVNSANEIIGDEAK
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHH
RKQYDRGEIDAEGKPRFQGFPGGGGARGGRAGGGGFEQHNFRNAGGGFAGGGGAGFEDIL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
NSMFGGAAGMRGGPRGGAQGFDFDTGGFAPDLDQTVAMTVTLEEAAKGTEKRVRLPTGKE
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCEEECCCCCE
LNVKIPAGVSSGQQIRLKGQGESAPGHRPGDLLITVNYAAHPHFKVDGNDLRLELPITLY
EEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEEECHHHH
EAVLGAKVRVPTLTGAIELSIPKNTSSGRTFRLKGKGLPKNGAAGDLFVTTRIVLPDGHD
HHHHCCEEEEEEEECEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCC
AELEALMQKWRDGHPYHPRSDLA
HHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRDPYEVLGVQRDASASAIKSAYRKLAKKHHPDANANDPKAAARFAEVNSANEIIGDEAK
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHH
RKQYDRGEIDAEGKPRFQGFPGGGGARGGRAGGGGFEQHNFRNAGGGFAGGGGAGFEDIL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
NSMFGGAAGMRGGPRGGAQGFDFDTGGFAPDLDQTVAMTVTLEEAAKGTEKRVRLPTGKE
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCEEECCCCCE
LNVKIPAGVSSGQQIRLKGQGESAPGHRPGDLLITVNYAAHPHFKVDGNDLRLELPITLY
EEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEEECHHHH
EAVLGAKVRVPTLTGAIELSIPKNTSSGRTFRLKGKGLPKNGAAGDLFVTTRIVLPDGHD
HHHHCCEEEEEEEECEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCC
AELEALMQKWRDGHPYHPRSDLA
HHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA