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The map label for this gene is ygeA [H]

Identifier: 86748272

GI number: 86748272

Start: 1319719

End: 1320444

Strand: Direct

Name: ygeA [H]

Synonym: RPB_1147

Alternate gene names: 86748272

Gene position: 1319719-1320444 (Clockwise)

Preceding gene: 86748270

Following gene: 86748273

Centisome position: 24.75

GC content: 65.56

Gene sequence:

>726_bases
ATGATGAAGACGATCGGCCTGATTGGCGGCATGAGCTGGGAGAGCACGGCGGTGTATTATCGCCGGCTCAACGAACAGGT
GCGCAAGGCGCGCGGCGGGCTGCATTCCGCCGAGATCCTGCTGCGCTCGGTCGATTTCGACACCATCGTCGCGCTGCAGA
CCGCCGGCGATTGGGACGGCGCCACGCGCGTGCTGCAGAAGATCGCCCGCGAATTGCAGGCCGCCGGCGCCGATTGCGTG
CTGATCTGCACCAATACGATGCACAAGCTCGCCGACGCGGTGCAAAGCGCGATCGACATCCCGCTTTTGAACATCATCGA
CATCTGCGCGCAGGAATTGAAGCAGGCCGGCGCCCGCAAGCCGCTGCTGCTGGCGACGCGCTACACCATGGAACACGATT
TCTATCGCGAGCGGATGCGCCGCCGCCACGGCATCGAGACCCTCGTGCCCGAGGCCGACGATCGCAGCGCGGTTCACGAC
GTCATCTTCACGGAACTGTGCTGCGGAATCATCCGCGACGCCTCGCGGCAGCGCTACATGGAGATCATCGCGAAGGGCCG
CGCCGCGGGTGCCGACAGCGTGATTCTCGGCTGCACCGAGATCGGCCTCTTGATCCAGCCGGAGAACATTGATCTACCGG
CTTACGACTCGACGCTGCTGCACGCCGATGCGGCGGTCGACTTCGCACTCGGCAGCGGCCCGCTCGGCCGCGCCGACGCA
GCCTAA

Upstream 100 bases:

>100_bases
GCAGCGACGATGACACGACCCGCGGCACGCCACGCTGATATTCCGCCGGGCGATCATCGCGACCACGTGCCGCGCCGGCG
GCATCGGACTGCGGAGACGG

Downstream 100 bases:

>100_bases
GGAGAACAAGAAAACATGCGCGCGATGGTCCTGCGGGAACACGGGGGGCTCGACAAGCTCACCTTCGATCCGAATTTCCC
CGATCCCGACATCGGACCCG

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MMKTIGLIGGMSWESTAVYYRRLNEQVRKARGGLHSAEILLRSVDFDTIVALQTAGDWDGATRVLQKIARELQAAGADCV
LICTNTMHKLADAVQSAIDIPLLNIIDICAQELKQAGARKPLLLATRYTMEHDFYRERMRRRHGIETLVPEADDRSAVHD
VIFTELCCGIIRDASRQRYMEIIAKGRAAGADSVILGCTEIGLLIQPENIDLPAYDSTLLHADAAVDFALGSGPLGRADA
A

Sequences:

>Translated_241_residues
MMKTIGLIGGMSWESTAVYYRRLNEQVRKARGGLHSAEILLRSVDFDTIVALQTAGDWDGATRVLQKIARELQAAGADCV
LICTNTMHKLADAVQSAIDIPLLNIIDICAQELKQAGARKPLLLATRYTMEHDFYRERMRRRHGIETLVPEADDRSAVHD
VIFTELCCGIIRDASRQRYMEIIAKGRAAGADSVILGCTEIGLLIQPENIDLPAYDSTLLHADAAVDFALGSGPLGRADA
A
>Mature_241_residues
MMKTIGLIGGMSWESTAVYYRRLNEQVRKARGGLHSAEILLRSVDFDTIVALQTAGDWDGATRVLQKIARELQAAGADCV
LICTNTMHKLADAVQSAIDIPLLNIIDICAQELKQAGARKPLLLATRYTMEHDFYRERMRRRHGIETLVPEADDRSAVHD
VIFTELCCGIIRDASRQRYMEIIAKGRAAGADSVILGCTEIGLLIQPENIDLPAYDSTLLHADAAVDFALGSGPLGRADA
A

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=229, Percent_Identity=49.3449781659389, Blast_Score=231, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: NA

Molecular weight: Translated: 26392; Mature: 26392

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKTIGLIGGMSWESTAVYYRRLNEQVRKARGGLHSAEILLRSVDFDTIVALQTAGDWDG
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEEEEECCCCCCH
ATRVLQKIARELQAAGADCVLICTNTMHKLADAVQSAIDIPLLNIIDICAQELKQAGARK
HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
PLLLATRYTMEHDFYRERMRRRHGIETLVPEADDRSAVHDVIFTELCCGIIRDASRQRYM
CEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EIIAKGRAAGADSVILGCTEIGLLIQPENIDLPAYDSTLLHADAAVDFALGSGPLGRADA
HHHHHCCCCCCCCEEEEHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MMKTIGLIGGMSWESTAVYYRRLNEQVRKARGGLHSAEILLRSVDFDTIVALQTAGDWDG
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEEEEECCCCCCH
ATRVLQKIARELQAAGADCVLICTNTMHKLADAVQSAIDIPLLNIIDICAQELKQAGARK
HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
PLLLATRYTMEHDFYRERMRRRHGIETLVPEADDRSAVHDVIFTELCCGIIRDASRQRYM
CEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EIIAKGRAAGADSVILGCTEIGLLIQPENIDLPAYDSTLLHADAAVDFALGSGPLGRADA
HHHHHCCCCCCCCEEEEHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]