Click here to switch to the map view.

The map label for this gene is soxD [H]

Identifier: 86748267

GI number: 86748267

Start: 1313080

End: 1313355

Strand: Direct

Name: soxD [H]

Synonym: RPB_1142

Alternate gene names: 86748267

Gene position: 1313080-1313355 (Clockwise)

Preceding gene: 86748266

Following gene: 86748268

Centisome position: 24.63

GC content: 65.22

Gene sequence:

>276_bases
ATGAGAATTCCCTGCCCGTATTGTGGATCGCGCGATGTCTCCGAGTTCTCCTATCTCGGCGACGCGGCGCCGCAAAGGCC
TGATCCGTCAGGCGACGCAAGCAGCGTCGAAGCGGCGTTCTTCGACTACGTCTATCTGCGCGACAACCCCGCCGGCCCGC
ATCGCGGGCTCTGGTATCACGGCGCCGGCTGCCGGAACTGGCTGGTGGTGAGGCGCAATCCGTCCACGCATGAAATCCTC
GAGGTCGCGCTTGCGGCGAAGGAGCCGGCGGCATGA

Upstream 100 bases:

>100_bases
CATCCCGCCGCCGTCGAGTTGCGGCTCGATCGGTTCGCGCGCGGTGCGGTGATCGACGAAAAGGGCCAGGGCGCCCAACC
GAATCTGCATTGAGGGCGCG

Downstream 100 bases:

>100_bases
GCGCGGCTTCACGCATCAGCGGCGGCCTGATTGATCGCGACAAGCCGCTGCGATTTTCCTTCGACGGCACGGCGATGACC
GGCTTCGCCGGCGACACGCT

Product: sarcosine oxidase, delta subunit, heterotetrameric

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MRIPCPYCGSRDVSEFSYLGDAAPQRPDPSGDASSVEAAFFDYVYLRDNPAGPHRGLWYHGAGCRNWLVVRRNPSTHEIL
EVALAAKEPAA

Sequences:

>Translated_91_residues
MRIPCPYCGSRDVSEFSYLGDAAPQRPDPSGDASSVEAAFFDYVYLRDNPAGPHRGLWYHGAGCRNWLVVRRNPSTHEIL
EVALAAKEPAA
>Mature_91_residues
MRIPCPYCGSRDVSEFSYLGDAAPQRPDPSGDASSVEAAFFDYVYLRDNPAGPHRGLWYHGAGCRNWLVVRRNPSTHEIL
EVALAAKEPAA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 10021; Mature: 10021

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPCPYCGSRDVSEFSYLGDAAPQRPDPSGDASSVEAAFFDYVYLRDNPAGPHRGLWYH
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEE
GAGCRNWLVVRRNPSTHEILEVALAAKEPAA
CCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRIPCPYCGSRDVSEFSYLGDAAPQRPDPSGDASSVEAAFFDYVYLRDNPAGPHRGLWYH
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEEE
GAGCRNWLVVRRNPSTHEILEVALAAKEPAA
CCCCCEEEEEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]