Click here to switch to the map view.

The map label for this gene is 86748234

Identifier: 86748234

GI number: 86748234

Start: 1276879

End: 1277472

Strand: Direct

Name: 86748234

Synonym: RPB_1109

Alternate gene names: NA

Gene position: 1276879-1277472 (Clockwise)

Preceding gene: 86748233

Following gene: 86748240

Centisome position: 23.95

GC content: 67.68

Gene sequence:

>594_bases
ATGTTTGCGCGTTTCGTAGCCGGAGCCTTGATGGCCGGCGCCACCGTCCTGCCGGCGATGGCCGGGTCGATGACCGCAGA
CGAAGCGCGCAAATTCGTCGCCAACAAAGTGTTCGCCTTCACCTGCTTCGATGGTACCCGCGGCGCAGGCCGGGTGTTCG
ACGATGGCGGCGCGGCCGGCGCGGTGCAGTTCTCCGGCTCGGGTCCCAATCGCTTCATGCGGCTGCCCGGCAATACGCTG
CAGGTGCGCGGCCAGTCGATCTGCGCATCGATCAAGGGCATCCCGTTCGACCCCTGCTTCAATCTCGACAAGACCGGCGA
GCGCAGCTTCCGTGGTTCGGTCTCCGGCATGGGCTTCGCCTATTGCGACTTCCGCCATCAGGGCGCCGGCCAAATGATGA
TGGTGCGGGCGATCTCGCGCTCGCAGCCGCGATCACTGCATGTCCCCGGCACTCGCCAGGCCGATGCGTCGCGCCATACC
GACGTCACCGGCCGGGTGCCGACCCCGCGGGTCGAGGCGATGCGGCTCGATCCGCCGAAGATCGACGCCTCGAAGGTCGA
GGCCGCCTCCGAACTGCGCCGCTCGACCGACTGA

Upstream 100 bases:

>100_bases
GCTGTTCAGACTTTACCAACCAAGCTGCGCCAATGTTGCCGCAGTTTGTATGGTAAGGAGCGGGTTAACGAGTCCGACCC
GCGCCAGTAGGAGTTCAGGC

Downstream 100 bases:

>100_bases
GCGCGTCCCGTCGGCGACGGCCGAGATCCGACGATCCTAGAAGTCCGTGGTCATCGACAGCCGGACCGTCAGGGGAAGGC
CCTGCGCGATGGTGCTGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MFARFVAGALMAGATVLPAMAGSMTADEARKFVANKVFAFTCFDGTRGAGRVFDDGGAAGAVQFSGSGPNRFMRLPGNTL
QVRGQSICASIKGIPFDPCFNLDKTGERSFRGSVSGMGFAYCDFRHQGAGQMMMVRAISRSQPRSLHVPGTRQADASRHT
DVTGRVPTPRVEAMRLDPPKIDASKVEAASELRRSTD

Sequences:

>Translated_197_residues
MFARFVAGALMAGATVLPAMAGSMTADEARKFVANKVFAFTCFDGTRGAGRVFDDGGAAGAVQFSGSGPNRFMRLPGNTL
QVRGQSICASIKGIPFDPCFNLDKTGERSFRGSVSGMGFAYCDFRHQGAGQMMMVRAISRSQPRSLHVPGTRQADASRHT
DVTGRVPTPRVEAMRLDPPKIDASKVEAASELRRSTD
>Mature_197_residues
MFARFVAGALMAGATVLPAMAGSMTADEARKFVANKVFAFTCFDGTRGAGRVFDDGGAAGAVQFSGSGPNRFMRLPGNTL
QVRGQSICASIKGIPFDPCFNLDKTGERSFRGSVSGMGFAYCDFRHQGAGQMMMVRAISRSQPRSLHVPGTRQADASRHT
DVTGRVPTPRVEAMRLDPPKIDASKVEAASELRRSTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21028; Mature: 21028

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFARFVAGALMAGATVLPAMAGSMTADEARKFVANKVFAFTCFDGTRGAGRVFDDGGAAG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEECCCCCCCCEEECCCCEE
AVQFSGSGPNRFMRLPGNTLQVRGQSICASIKGIPFDPCFNLDKTGERSFRGSVSGMGFA
EEEECCCCCCEEEECCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
YCDFRHQGAGQMMMVRAISRSQPRSLHVPGTRQADASRHTDVTGRVPTPRVEAMRLDPPK
EEECCCCCCCCEEHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
IDASKVEAASELRRSTD
CCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFARFVAGALMAGATVLPAMAGSMTADEARKFVANKVFAFTCFDGTRGAGRVFDDGGAAG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEECCCCCCCCEEECCCCEE
AVQFSGSGPNRFMRLPGNTLQVRGQSICASIKGIPFDPCFNLDKTGERSFRGSVSGMGFA
EEEECCCCCCEEEECCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
YCDFRHQGAGQMMMVRAISRSQPRSLHVPGTRQADASRHTDVTGRVPTPRVEAMRLDPPK
EEECCCCCCCCEEHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
IDASKVEAASELRRSTD
CCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA