Click here to switch to the map view.

The map label for this gene is 86748229

Identifier: 86748229

GI number: 86748229

Start: 1269952

End: 1271370

Strand: Direct

Name: 86748229

Synonym: RPB_1104

Alternate gene names: NA

Gene position: 1269952-1271370 (Clockwise)

Preceding gene: 86748228

Following gene: 86748233

Centisome position: 23.82

GC content: 67.02

Gene sequence:

>1419_bases
ATGTCAGTCATGCGTAACCGGCCGAAGGGCGCACGGATCGCGTCCTTCGGTCTCGGGCTCTGCGTCTTCGCAGTGTTTCC
GAACGAAATCGGCTATCAGGATATTGCTTCGCTGCTGGTCCGCCAGCCGGGCGTCACCGAGCGTTGGCAGAAGCGGATGT
TCGCGTCGTCGTTCGGTTCGATCCAGGTCGCCACATTCTCGTTCGGACGCCCGATCGGCACCTGGACGCCGCAGGTCGCC
AACTCCCGGCTCGCCAGCCTCGACGGCAGATTCGGCCTGAGCGGGGCGATGACCCGCAATCGGCTGGCGCAGCCGCCGCA
GCCCTATCAGGCCTCCGATTTCCCGGCGGTCGATCGCACGCTGAAGGGCGATCGCCTTGCGATCTTCAAGCCGGAGCCCG
CGTCGCCCGACGACGCTGCGCCGTCTGCGACCGACGATTCGAACGCACCGAACGTCGCCGGTGCCAAGATTGCTGCCAAG
CCTACCGCGCACGAACCGACCGAGACTTCGCCGCTCGATCCCGAACTCGCCGAAGCGCTGCAGTCCGAGCCGTTGACGCC
GTACGATGTCGCGCATGCGCTGGAGTCCGATCCGCTGCACGCCGCCGGCCCGGCCGATGCGGCCGGGGCACCGCCGCGCG
ACCCTTTCACCTTCAAGACCGCGAGCCTGTTTTTCGGCACCGGCTCGCTCGGCGGACCGGATGAATCGCTGGAGCAGTGG
CAGCCCGGCGAAGAGCCGATCATCGTCACGCCGCACGGGGCCGATCCGGACATGAAGTCGCCGCTGCTGTCGGCGACGGC
CGTGGCGCCGGACGTGCCCGGCGAGACCATCGCCGGCAAGGGTGAGGTCAATATCGACCGCCATGCGAGGACGCCGGCCG
AACGGCTCGGCCTGTCCGATCCGAAGCTGCGCGCCAGGCACGAGAAGTGCCTCGCCGAGGCGGTGTATTTCGAATCGCGC
GGCGAAAAGGTGCGCGGCCAGATCGCGGTGGCGCAGGTGGTGCTGAACCGCGCCTTCTCCGGTTTCTATCCGACCAATGT
CTGCGGCGTGGTGTATCAGAACAAGCACCGGCGGCTGGCCTGTCAGTTCACCTTCGCGTGCGATCGCGTCGCCGATATCG
TGCGCGAACCGGAGATGTGGGATCGCGCCCGGCGCATCGCCGCAGCGATGCTCGACGGCAAATTGTGGCTGCCCGAGGTC
GACAAGTCGACGCACTACCACGCCTATTGGGTGCGACCGTCCTGGGTCCACGAGATGAAGAAGATGTACAAGACCGGCGT
CCACACCTTCTATCGCCCGCGCAAATGGGGCGACGGCAGCGATGCCCCGAGCTGGGGCGACGCCGCCCAAACCGCCGCCA
TTTCCGCCCAACTCTCCGAAGCCGCCAGGAGCTCGGCCGAGATCAGCGCGAAGAACTGA

Upstream 100 bases:

>100_bases
GCCGATTAACCCGCAGGCAACTTTAATCAGATAACAACAGAAACGATCGACTTGTCGGAAACGGCAGGCGGATCCCAGTA
AGCGTTGCGTGAGCGTACCG

Downstream 100 bases:

>100_bases
CGGCTTGGCTCACTCCGTCATTCCGGGGCGCGCGTAGCGCGAAACCGGAATCTCGAAGTGTAGCGCAATGAGCCTCCCCG
ACAACGCCCTGCGCAAGTTT

Product: cell wall hydrolase, SleB

Products: NA

Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MSVMRNRPKGARIASFGLGLCVFAVFPNEIGYQDIASLLVRQPGVTERWQKRMFASSFGSIQVATFSFGRPIGTWTPQVA
NSRLASLDGRFGLSGAMTRNRLAQPPQPYQASDFPAVDRTLKGDRLAIFKPEPASPDDAAPSATDDSNAPNVAGAKIAAK
PTAHEPTETSPLDPELAEALQSEPLTPYDVAHALESDPLHAAGPADAAGAPPRDPFTFKTASLFFGTGSLGGPDESLEQW
QPGEEPIIVTPHGADPDMKSPLLSATAVAPDVPGETIAGKGEVNIDRHARTPAERLGLSDPKLRARHEKCLAEAVYFESR
GEKVRGQIAVAQVVLNRAFSGFYPTNVCGVVYQNKHRRLACQFTFACDRVADIVREPEMWDRARRIAAAMLDGKLWLPEV
DKSTHYHAYWVRPSWVHEMKKMYKTGVHTFYRPRKWGDGSDAPSWGDAAQTAAISAQLSEAARSSAEISAKN

Sequences:

>Translated_472_residues
MSVMRNRPKGARIASFGLGLCVFAVFPNEIGYQDIASLLVRQPGVTERWQKRMFASSFGSIQVATFSFGRPIGTWTPQVA
NSRLASLDGRFGLSGAMTRNRLAQPPQPYQASDFPAVDRTLKGDRLAIFKPEPASPDDAAPSATDDSNAPNVAGAKIAAK
PTAHEPTETSPLDPELAEALQSEPLTPYDVAHALESDPLHAAGPADAAGAPPRDPFTFKTASLFFGTGSLGGPDESLEQW
QPGEEPIIVTPHGADPDMKSPLLSATAVAPDVPGETIAGKGEVNIDRHARTPAERLGLSDPKLRARHEKCLAEAVYFESR
GEKVRGQIAVAQVVLNRAFSGFYPTNVCGVVYQNKHRRLACQFTFACDRVADIVREPEMWDRARRIAAAMLDGKLWLPEV
DKSTHYHAYWVRPSWVHEMKKMYKTGVHTFYRPRKWGDGSDAPSWGDAAQTAAISAQLSEAARSSAEISAKN
>Mature_471_residues
SVMRNRPKGARIASFGLGLCVFAVFPNEIGYQDIASLLVRQPGVTERWQKRMFASSFGSIQVATFSFGRPIGTWTPQVAN
SRLASLDGRFGLSGAMTRNRLAQPPQPYQASDFPAVDRTLKGDRLAIFKPEPASPDDAAPSATDDSNAPNVAGAKIAAKP
TAHEPTETSPLDPELAEALQSEPLTPYDVAHALESDPLHAAGPADAAGAPPRDPFTFKTASLFFGTGSLGGPDESLEQWQ
PGEEPIIVTPHGADPDMKSPLLSATAVAPDVPGETIAGKGEVNIDRHARTPAERLGLSDPKLRARHEKCLAEAVYFESRG
EKVRGQIAVAQVVLNRAFSGFYPTNVCGVVYQNKHRRLACQFTFACDRVADIVREPEMWDRARRIAAAMLDGKLWLPEVD
KSTHYHAYWVRPSWVHEMKKMYKTGVHTFYRPRKWGDGSDAPSWGDAAQTAAISAQLSEAARSSAEISAKN

Specific function: Unknown

COG id: COG3773

COG function: function code M; Cell wall hydrolyses involved in spore germination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51228; Mature: 51097

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVMRNRPKGARIASFGLGLCVFAVFPNEIGYQDIASLLVRQPGVTERWQKRMFASSFGS
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
IQVATFSFGRPIGTWTPQVANSRLASLDGRFGLSGAMTRNRLAQPPQPYQASDFPAVDRT
EEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHH
LKGDRLAIFKPEPASPDDAAPSATDDSNAPNVAGAKIAAKPTAHEPTETSPLDPELAEAL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHH
QSEPLTPYDVAHALESDPLHAAGPADAAGAPPRDPFTFKTASLFFGTGSLGGPDESLEQW
HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHC
QPGEEPIIVTPHGADPDMKSPLLSATAVAPDVPGETIAGKGEVNIDRHARTPAERLGLSD
CCCCCCEEEECCCCCCCHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHCCCCC
PKLRARHEKCLAEAVYFESRGEKVRGQIAVAQVVLNRAFSGFYPTNVCGVVYQNKHRRLA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
CQFTFACDRVADIVREPEMWDRARRIAAAMLDGKLWLPEVDKSTHYHAYWVRPSWVHEMK
EEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCHHHHHHHH
KMYKTGVHTFYRPRKWGDGSDAPSWGDAAQTAAISAQLSEAARSSAEISAKN
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SVMRNRPKGARIASFGLGLCVFAVFPNEIGYQDIASLLVRQPGVTERWQKRMFASSFGS
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
IQVATFSFGRPIGTWTPQVANSRLASLDGRFGLSGAMTRNRLAQPPQPYQASDFPAVDRT
EEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHH
LKGDRLAIFKPEPASPDDAAPSATDDSNAPNVAGAKIAAKPTAHEPTETSPLDPELAEAL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHH
QSEPLTPYDVAHALESDPLHAAGPADAAGAPPRDPFTFKTASLFFGTGSLGGPDESLEQW
HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHC
QPGEEPIIVTPHGADPDMKSPLLSATAVAPDVPGETIAGKGEVNIDRHARTPAERLGLSD
CCCCCCEEEECCCCCCCHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHCCCCC
PKLRARHEKCLAEAVYFESRGEKVRGQIAVAQVVLNRAFSGFYPTNVCGVVYQNKHRRLA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
CQFTFACDRVADIVREPEMWDRARRIAAAMLDGKLWLPEVDKSTHYHAYWVRPSWVHEMK
EEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCHHHHHHHH
KMYKTGVHTFYRPRKWGDGSDAPSWGDAAQTAAISAQLSEAARSSAEISAKN
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA