| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yaeT [H]
Identifier: 86747877
GI number: 86747877
Start: 840299
End: 842821
Strand: Direct
Name: yaeT [H]
Synonym: RPB_0751
Alternate gene names: 86747877
Gene position: 840299-842821 (Clockwise)
Preceding gene: 86747875
Following gene: 86747881
Centisome position: 15.76
GC content: 62.5
Gene sequence:
>2523_bases ATGATACGTCGGTGGGGCACGACAATTGCCAAGTTACTCTTCGCGGCGACGCTGCTGGCGTCGGACGTGACTTCGATGGC GGGCGTGGCTGCCGCGCAGGTCGCATCCAGCGCCTCCGCGAGCATCGTCGTCGAGGGTAATCGTCGTGTCGAGGCCGACA CCATCCGCTCCTATTTCAAGCCGGGCCCCGACGGCCGTCTCGACCCGTCGGCGCTCGACGACGGGCTGAAGGGCCTGATC GCGACCGGCCTGTTTCAGGACGTCAAGATCAACGGCGCCGGAGGCCGTCTGGTGGTGGCCGTGGTCGAGAATCCGGTGAT CGGTCGGGTCGTGTTCGAGGGCAACAAGAAGATCAAGGACGAACAGCTTTCAGCCGAGCTGCAGTCCAGGCCGCGCGGCG CGTTGTCGCGAGCGGTGGTGCAGTCGGACACGCTGCGGATCGCCGAGATCTATCGACGTTCGGGTCGCTACGACGTTCGC GTCACGCCGGAAGTGATCGACCGGCCGAACGGTCGCGTCGACCTGGTGTTTCGCGTCGAAGAGGGCGCGAAGACCGGCGT CAAGTCGATCGAGTTCGTCGGCAACGTCGCGTTTTCGGCGTCGCGGCTGAGGGACGTGATCCGGACCCGGGAAACCAACT TCCTGAGCTTTCTCGCCAGTAACGACATCTACGATCCGGATCGGGTGGAAGCCGATCGCGACCTGATTCGGCGGTTCTAT CTCAAGAACGGCTTCGCGGACGCGCAGGTGGTGGCCGCGCTGACCGAATTCGATCCCGACAAGAAGGGCTTCCTCATCAC CTTCAAGATCGAGGAAGGGCAGCAGTACCGGATCGGGTCGGTCGATTTCCGCGCCAATATCCCGGGCTTCGACCCGAACT GGCTGCGCAGCTATTCCCGCGTCAAGGCCGGGGCGCTCTACAACGTCGAACTGCTGGAAAAATCCGTCGAGGAAATGCAG ATCGAGGCCTCGCGCCGCGGATTTTCCTTCGCGGTGGTGAAGCCCAGCGGCGACCGCAACTTCGACTCGCACACCGTGTC GGTCACTTTCAACGCCGATGAGGGCGCGCGCATCTACATCGAGCGGATCGAGATCCGCGGCAATACGCGGACGCGCGACT ACGTGCTCCGGCGCGAGTTCGATGTCGCCGAAGGCGACGCCTACAACCGCGCGCTGGTGGACCGCGCCGAGCGGCGCCTG AAGAACCTGGATTTCTTCAAGTCGGTGAAGATCGTCACGGAGCCGGGGTCGTCGACCGACCGCGTCATCCTCGCCGTCGA GGTCGAGGAAAAGTCGACCGGCGATTTCTCGGTCTCGGGCGGCTATTCGACCAGCGACGGCGCACTGGGCGAGGTGTCGG TCTCCGAACGCAACCTGATGGGGCGCGGTCTGTTTGGGAAGGTGTCGGTGTCCTACGGGCAGTATTCGCGGGGCGCGTCG CTGTCGATCGTCGAGCCGTATCTGTTCGACTACCGGCTCGCGCTGGGGCTGGACCTCTACTACAAGCAGCAACTTCAGAA CAGCTACACCAGCTACGATATGACGACGCTGGGGTTCTCGCCCCGTCTCGGCATCGCGTTGCGCGAGGATTTGTCGCTGC AGTTGCGATACTCGCTGTATCAACAAAAGGTGACGCTGTCGGACGCCTACAACAATTGCAACAACAACGCCGCGAACACC TCCCTCTCTTACAATCCGACCCCGGCCTACATCAAGGAAGTGCTGGGGGGCGTCGACCCGACCAATGCGAGCGGTTCATC GTATTACGGCTACGGCTGCTACGCCGACGGCGAAACCAGCCTGCCGGTCCGCAAGGAGCTGGCCGACGGCGCCAAAATCA CTTCGTCGATCGGCTACACGCTCAATTACAATACGCTGGACAATACCAAGAATCCGACCGACGGGCTTCTTCTCGACTTG CGCCAGGACTTCGCCGGCGTCGGCGGCGACGTGACCTACTTGAAGACCGTGGGCGACGCGAAATACTACACGCCGCTGGT CGCCGAAATCGTCGGCCTGATCCACCTGCAAGGCGGCGTGCTCAGCAAGCTCGGCAACAACGAGATCAGGATGCTGGATC ATTTCCAGATGGGCGCGAACCTGGTGCGCGGCTTTGCGACGAACGGCATCGGACCGCGCGACATCAGTTACTGGAGCATG AGTGAATCGGGCGATTCGCTGGGCGGCACGAAATATTGGGGCGCGTCGTTCGAATTGCAGATGCCGTTCTGGTTCCTTCC CAAAGAGGTCGGGTTGAAGGGCGCGGTGTACGCCGACGCGGGATCGTTGTGGGGCTATCAGGGCCCGACCTCGTGGGCCG CGACCGGCGAAGTGAATTCGTCCGCCTGCCCGCATTGCGGACTGCAATATGACGACAGCAAGATCGTCCGCAGCTCGGTC GGTGTCGGATTGATCTGGGCGTCGCCGTTCGGCCCGTTGAGGTTCGACTACGCCATCCCACTGTCGAAAGGCAAATACGA CACCGTGCAGGAGTTCAAATTCGGCGGCGGAACGTCGTTCTAA
Upstream 100 bases:
>100_bases ATATGATTCTCAATTCTCAGCAACGATTGCGAAATCCGGAGGCCATACCGCCGCCACGCCGATCGCATCATCAGAACACT GGTAGATCACGAGGTCGGGA
Downstream 100 bases:
>100_bases GAGCGCGTCATCGAATGACTGAAGCAACGCGGCATTCTCGCGTGCGGAGTCGTCATCCTGAGAGCCTGCCCCGGACTTGA TCCGGGGTGCGAGCGCAGCG
Product: surface antigen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MIRRWGTTIAKLLFAATLLASDVTSMAGVAAAQVASSASASIVVEGNRRVEADTIRSYFKPGPDGRLDPSALDDGLKGLI ATGLFQDVKINGAGGRLVVAVVENPVIGRVVFEGNKKIKDEQLSAELQSRPRGALSRAVVQSDTLRIAEIYRRSGRYDVR VTPEVIDRPNGRVDLVFRVEEGAKTGVKSIEFVGNVAFSASRLRDVIRTRETNFLSFLASNDIYDPDRVEADRDLIRRFY LKNGFADAQVVAALTEFDPDKKGFLITFKIEEGQQYRIGSVDFRANIPGFDPNWLRSYSRVKAGALYNVELLEKSVEEMQ IEASRRGFSFAVVKPSGDRNFDSHTVSVTFNADEGARIYIERIEIRGNTRTRDYVLRREFDVAEGDAYNRALVDRAERRL KNLDFFKSVKIVTEPGSSTDRVILAVEVEEKSTGDFSVSGGYSTSDGALGEVSVSERNLMGRGLFGKVSVSYGQYSRGAS LSIVEPYLFDYRLALGLDLYYKQQLQNSYTSYDMTTLGFSPRLGIALREDLSLQLRYSLYQQKVTLSDAYNNCNNNAANT SLSYNPTPAYIKEVLGGVDPTNASGSSYYGYGCYADGETSLPVRKELADGAKITSSIGYTLNYNTLDNTKNPTDGLLLDL RQDFAGVGGDVTYLKTVGDAKYYTPLVAEIVGLIHLQGGVLSKLGNNEIRMLDHFQMGANLVRGFATNGIGPRDISYWSM SESGDSLGGTKYWGASFELQMPFWFLPKEVGLKGAVYADAGSLWGYQGPTSWAATGEVNSSACPHCGLQYDDSKIVRSSV GVGLIWASPFGPLRFDYAIPLSKGKYDTVQEFKFGGGTSF
Sequences:
>Translated_840_residues MIRRWGTTIAKLLFAATLLASDVTSMAGVAAAQVASSASASIVVEGNRRVEADTIRSYFKPGPDGRLDPSALDDGLKGLI ATGLFQDVKINGAGGRLVVAVVENPVIGRVVFEGNKKIKDEQLSAELQSRPRGALSRAVVQSDTLRIAEIYRRSGRYDVR VTPEVIDRPNGRVDLVFRVEEGAKTGVKSIEFVGNVAFSASRLRDVIRTRETNFLSFLASNDIYDPDRVEADRDLIRRFY LKNGFADAQVVAALTEFDPDKKGFLITFKIEEGQQYRIGSVDFRANIPGFDPNWLRSYSRVKAGALYNVELLEKSVEEMQ IEASRRGFSFAVVKPSGDRNFDSHTVSVTFNADEGARIYIERIEIRGNTRTRDYVLRREFDVAEGDAYNRALVDRAERRL KNLDFFKSVKIVTEPGSSTDRVILAVEVEEKSTGDFSVSGGYSTSDGALGEVSVSERNLMGRGLFGKVSVSYGQYSRGAS LSIVEPYLFDYRLALGLDLYYKQQLQNSYTSYDMTTLGFSPRLGIALREDLSLQLRYSLYQQKVTLSDAYNNCNNNAANT SLSYNPTPAYIKEVLGGVDPTNASGSSYYGYGCYADGETSLPVRKELADGAKITSSIGYTLNYNTLDNTKNPTDGLLLDL RQDFAGVGGDVTYLKTVGDAKYYTPLVAEIVGLIHLQGGVLSKLGNNEIRMLDHFQMGANLVRGFATNGIGPRDISYWSM SESGDSLGGTKYWGASFELQMPFWFLPKEVGLKGAVYADAGSLWGYQGPTSWAATGEVNSSACPHCGLQYDDSKIVRSSV GVGLIWASPFGPLRFDYAIPLSKGKYDTVQEFKFGGGTSF >Mature_840_residues MIRRWGTTIAKLLFAATLLASDVTSMAGVAAAQVASSASASIVVEGNRRVEADTIRSYFKPGPDGRLDPSALDDGLKGLI ATGLFQDVKINGAGGRLVVAVVENPVIGRVVFEGNKKIKDEQLSAELQSRPRGALSRAVVQSDTLRIAEIYRRSGRYDVR VTPEVIDRPNGRVDLVFRVEEGAKTGVKSIEFVGNVAFSASRLRDVIRTRETNFLSFLASNDIYDPDRVEADRDLIRRFY LKNGFADAQVVAALTEFDPDKKGFLITFKIEEGQQYRIGSVDFRANIPGFDPNWLRSYSRVKAGALYNVELLEKSVEEMQ IEASRRGFSFAVVKPSGDRNFDSHTVSVTFNADEGARIYIERIEIRGNTRTRDYVLRREFDVAEGDAYNRALVDRAERRL KNLDFFKSVKIVTEPGSSTDRVILAVEVEEKSTGDFSVSGGYSTSDGALGEVSVSERNLMGRGLFGKVSVSYGQYSRGAS LSIVEPYLFDYRLALGLDLYYKQQLQNSYTSYDMTTLGFSPRLGIALREDLSLQLRYSLYQQKVTLSDAYNNCNNNAANT SLSYNPTPAYIKEVLGGVDPTNASGSSYYGYGCYADGETSLPVRKELADGAKITSSIGYTLNYNTLDNTKNPTDGLLLDL RQDFAGVGGDVTYLKTVGDAKYYTPLVAEIVGLIHLQGGVLSKLGNNEIRMLDHFQMGANLVRGFATNGIGPRDISYWSM SESGDSLGGTKYWGASFELQMPFWFLPKEVGLKGAVYADAGSLWGYQGPTSWAATGEVNSSACPHCGLQYDDSKIVRSSV GVGLIWASPFGPLRFDYAIPLSKGKYDTVQEFKFGGGTSF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Homo sapiens, GI225543166, Length=516, Percent_Identity=21.3178294573643, Blast_Score=74, Evalue=8e-13, Organism=Escherichia coli, GI1786374, Length=801, Percent_Identity=27.9650436953808, Blast_Score=271, Evalue=1e-73,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 92229; Mature: 92229
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00539 PYROKININ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRWGTTIAKLLFAATLLASDVTSMAGVAAAQVASSASASIVVEGNRRVEADTIRSYFK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECHHHHHHHCC PGPDGRLDPSALDDGLKGLIATGLFQDVKINGAGGRLVVAVVENPVIGRVVFEGNKKIKD CCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCH EQLSAELQSRPRGALSRAVVQSDTLRIAEIYRRSGRYDVRVTPEVIDRPNGRVDLVFRVE HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHHHHCCCCCCEEEEEEEC EGAKTGVKSIEFVGNVAFSASRLRDVIRTRETNFLSFLASNDIYDPDRVEADRDLIRRFY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCHHHHHHHHHHHHHH LKNGFADAQVVAALTEFDPDKKGFLITFKIEEGQQYRIGSVDFRANIPGFDPNWLRSYSR HHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEECEEEEECCCCCCCHHHHHHHHH VKAGALYNVELLEKSVEEMQIEASRRGFSFAVVKPSGDRNFDSHTVSVTFNADEGARIYI HHCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEE ERIEIRGNTRTRDYVLRREFDVAEGDAYNRALVDRAERRLKNLDFFKSVKIVTEPGSSTD EEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCC RVILAVEVEEKSTGDFSVSGGYSTSDGALGEVSVSERNLMGRGLFGKVSVSYGQYSRGAS EEEEEEEECCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCC LSIVEPYLFDYRLALGLDLYYKQQLQNSYTSYDMTTLGFSPRLGIALREDLSLQLRYSLY EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCEEEEEHHH QQKVTLSDAYNNCNNNAANTSLSYNPTPAYIKEVLGGVDPTNASGSSYYGYGCYADGETS HHHEEHHHHHCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC LPVRKELADGAKITSSIGYTLNYNTLDNTKNPTDGLLLDLRQDFAGVGGDVTYLKTVGDA CCHHHHHCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEEHHHHCCCCCCEEEEEECCCC KYYTPLVAEIVGLIHLQGGVLSKLGNNEIRMLDHFQMGANLVRGFATNGIGPRDISYWSM HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEC SESGDSLGGTKYWGASFELQMPFWFLPKEVGLKGAVYADAGSLWGYQGPTSWAATGEVNS CCCCCCCCCCEECCCEEEEECCCEECCHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCC SACPHCGLQYDDSKIVRSSVGVGLIWASPFGPLRFDYAIPLSKGKYDTVQEFKFGGGTSF CCCCCCCCEECCHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCC >Mature Secondary Structure MIRRWGTTIAKLLFAATLLASDVTSMAGVAAAQVASSASASIVVEGNRRVEADTIRSYFK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECHHHHHHHCC PGPDGRLDPSALDDGLKGLIATGLFQDVKINGAGGRLVVAVVENPVIGRVVFEGNKKIKD CCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCH EQLSAELQSRPRGALSRAVVQSDTLRIAEIYRRSGRYDVRVTPEVIDRPNGRVDLVFRVE HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHHHHCCCCCCEEEEEEEC EGAKTGVKSIEFVGNVAFSASRLRDVIRTRETNFLSFLASNDIYDPDRVEADRDLIRRFY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCHHHHHHHHHHHHHH LKNGFADAQVVAALTEFDPDKKGFLITFKIEEGQQYRIGSVDFRANIPGFDPNWLRSYSR HHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEECEEEEECCCCCCCHHHHHHHHH VKAGALYNVELLEKSVEEMQIEASRRGFSFAVVKPSGDRNFDSHTVSVTFNADEGARIYI HHCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEE ERIEIRGNTRTRDYVLRREFDVAEGDAYNRALVDRAERRLKNLDFFKSVKIVTEPGSSTD EEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCC RVILAVEVEEKSTGDFSVSGGYSTSDGALGEVSVSERNLMGRGLFGKVSVSYGQYSRGAS EEEEEEEECCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCC LSIVEPYLFDYRLALGLDLYYKQQLQNSYTSYDMTTLGFSPRLGIALREDLSLQLRYSLY EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCEEEEEHHH QQKVTLSDAYNNCNNNAANTSLSYNPTPAYIKEVLGGVDPTNASGSSYYGYGCYADGETS HHHEEHHHHHCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC LPVRKELADGAKITSSIGYTLNYNTLDNTKNPTDGLLLDLRQDFAGVGGDVTYLKTVGDA CCHHHHHCCCCHHHHCCCEEEEECCCCCCCCCCCCEEEEEHHHHCCCCCCEEEEEECCCC KYYTPLVAEIVGLIHLQGGVLSKLGNNEIRMLDHFQMGANLVRGFATNGIGPRDISYWSM HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEC SESGDSLGGTKYWGASFELQMPFWFLPKEVGLKGAVYADAGSLWGYQGPTSWAATGEVNS CCCCCCCCCCEECCCEEEEECCCEECCHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCC SACPHCGLQYDDSKIVRSSVGVGLIWASPFGPLRFDYAIPLSKGKYDTVQEFKFGGGTSF CCCCCCCCEECCHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA