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The map label for this gene is yggS [C]

Identifier: 86747509

GI number: 86747509

Start: 423846

End: 424511

Strand: Reverse

Name: yggS [C]

Synonym: RPB_0383

Alternate gene names: 86747509

Gene position: 424511-423846 (Counterclockwise)

Preceding gene: 86747514

Following gene: 86747507

Centisome position: 7.96

GC content: 68.62

Gene sequence:

>666_bases
GTGAGCGCCGGCCCGGTTCAGGGGCTGGCCGCCGTCGAGCAGGAGATTGCCCGGGCCTGCCAGGAGGCGCGCCGCGACCG
CGATTCGGTGACGCTGATCGCGGTGTCGAAGACGTTCGAGGCCGACGCCATCCTGCCGGTGCTGGCCGCCGGGCAACGGG
TGTTCGGCGAGAACCGCGTCCAGGAGGCCAAGGCCAAATGGCCGCCGCTGCTGGAGAGCCATCCCGACACCGCGCTGCAT
CTGATCGGGCCGCTGCAATCCAACAAGGCCAAGGAGGCGGTCGCGCTGTTCGACGCGATCCATTCGGTCGATCGCGAGAG
CCTGTGCGAGGCGCTCGCCAAGGTGTTGCCGGCCTCCGGCCGCGCGGTCGAATTGTTCGTCCAGATCAATACCGGCGAGG
AGCCGCAGAAAGCTGGAATCGCGCCGCAGGACGCCGATGCGTTCATCGCCGCCTGCCGCGACCGCTTCGGGCTCACCATC
GCCGGGCTGATGTGCATCCCTCCGGTCGACGAAGCCCCGGCGCCGCATTTCGCGCTGACGGCCAAGATCGCCAAACGCAA
CGGCCTGGCGAAACTGTCGATGGGCATGAGCTCCGACTTCGCCACCGCGATCGCATTCGGCGCCACGCATGTGCGGGTCG
GTTCGGCGATCTTCGGGCATCGGTAG

Upstream 100 bases:

>100_bases
ATTGAATGAAAATACGACCTGCGAGTGCATTCGACTTCCGTTTCGCGTCGTTCGACCGTCCGTCACGCGCCGCCGCGGCG
CGAAACCGCCGGGGAATGCG

Downstream 100 bases:

>100_bases
GGCGACAGTTCTCACGCCCGCCGCCCGGTGCCGCGGCGGCTCAGCTTTCAGCCGTCACCACCCGCGAAAGCACGCCCCGC
ACCGTATTCGGCCGTCATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSAGPVQGLAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRVQEAKAKWPPLLESHPDTALH
LIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASGRAVELFVQINTGEEPQKAGIAPQDADAFIAACRDRFGLTI
AGLMCIPPVDEAPAPHFALTAKIAKRNGLAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR

Sequences:

>Translated_221_residues
MSAGPVQGLAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRVQEAKAKWPPLLESHPDTALH
LIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASGRAVELFVQINTGEEPQKAGIAPQDADAFIAACRDRFGLTI
AGLMCIPPVDEAPAPHFALTAKIAKRNGLAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR
>Mature_220_residues
SAGPVQGLAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRVQEAKAKWPPLLESHPDTALHL
IGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASGRAVELFVQINTGEEPQKAGIAPQDADAFIAACRDRFGLTIA
GLMCIPPVDEAPAPHFALTAKIAKRNGLAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=34.7280334728033, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=37.280701754386, Blast_Score=123, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=36, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6319435, Length=213, Percent_Identity=35.2112676056338, Blast_Score=81, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=37.914691943128, Blast_Score=117, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23355; Mature: 23224

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGPVQGLAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHCHHHH
QEAKAKWPPLLESHPDTALHLIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASG
HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
RAVELFVQINTGEEPQKAGIAPQDADAFIAACRDRFGLTIAGLMCIPPVDEAPAPHFALT
CEEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHH
AKIAKRNGLAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR
HHHHHHCCCEEECCCCCCHHHHHHHHCCHHHHHCCHHHCCC
>Mature Secondary Structure 
SAGPVQGLAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHCHHHH
QEAKAKWPPLLESHPDTALHLIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASG
HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
RAVELFVQINTGEEPQKAGIAPQDADAFIAACRDRFGLTIAGLMCIPPVDEAPAPHFALT
CEEEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHH
AKIAKRNGLAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR
HHHHHHCCCEEECCCCCCHHHHHHHHCCHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]