BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is ccmA

Identifier: 86747418

GI number: 86747418

Start: 331635

End: 332237

Strand: Direct

Name: ccmA

Synonym: RPB_0292

Alternate gene names: 86747418

Gene position: 331635-332237 (Clockwise)

Preceding gene: 86747414

Following gene: 86747419

Centisome position: 6.22

GC content: 69.82

Gene sequence:

>603_bases
ATGCGGCTTTCGGGACGCGGACTGAGGTGTGTGCGAGGCGGCCGCGAGGTGTTCGACGGACTCGATTTCGAGGCCGCCGG
CGGCGAGGCGCTGGCGCTGATCGGCCGTAACGGCGCCGGCAAGACGTCGTTGCTGCGGTTGATCGCCGGCCTGCTGATGC
CGGCGGCGGGTAGTATCGACTTCGACGGCAGCGAGCCGGACACGCCGGTGGCCGAGCAGGCGCATTACCTCGGCCATCGC
GACGCGTTGAAGCCGTCGCTCAGCGTCGTCGAAAATCTCGCGTTCTGGCGCGACTTTCTCGGCGGCGAACCGACCGATCT
GATGGCCGGGATCACCGCCGTGGGGCTGTCGCACGCCGCGGAACTGCCGGCGGCTTATTTGTCCGCCGGCCAGCGCCGGC
GGTTGTCGATCGCGCGACTGCTGGTTGTGCGCCGGCCGATCTGGCTGCTCGACGAGCCGACCTCGGCGCTCGACGTCAGG
GGTCAGGCCATGTTCGCTCGGCTGATGAGCGACCACCTCGCAAGCGGCGGCCTGATCGTCGCCGCCACTCACAGCCCGCT
CGGCATCACCACGCGCGAGATGCGGATCGGAGCGGCGGCGTGA

Upstream 100 bases:

>100_bases
AGAACCTTTCCAGATGCGCCGCCAGTTCGACAACGACTAGCGCCCGCATCGATTGTAAGCAAGGCGATCCCGATTCCGGG
GGCGGAACAGGCGATTTGGA

Downstream 100 bases:

>100_bases
GCGGGGTGCGGGTCATGAACGGATTGCGTTTCGCGGCGGCGCGATCGCCGGCGTCGTGCTCGGGGACCCCCACCCCCGAC
TCCGGACCGAGCCATGGGCA

Product: cytochrome c biogenesis protein CcmA

Products: NA

Alternate protein names: Heme exporter protein A

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MRLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSIDFDGSEPDTPVAEQAHYLGHR
DALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGLSHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVR
GQAMFARLMSDHLASGGLIVAATHSPLGITTREMRIGAAA

Sequences:

>Translated_200_residues
MRLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSIDFDGSEPDTPVAEQAHYLGHR
DALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGLSHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVR
GQAMFARLMSDHLASGGLIVAATHSPLGITTREMRIGAAA
>Mature_200_residues
MRLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSIDFDGSEPDTPVAEQAHYLGHR
DALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGLSHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVR
GQAMFARLMSDHLASGGLIVAATHSPLGITTREMRIGAAA

Specific function: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system

COG id: COG4133

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain

Homologues:

Organism=Homo sapiens, GI27436953, Length=146, Percent_Identity=32.1917808219178, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI105990541, Length=178, Percent_Identity=30.3370786516854, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI27477115, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI46592971, Length=182, Percent_Identity=29.6703296703297, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI46592964, Length=182, Percent_Identity=29.6703296703297, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI46592978, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI46592915, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI9665248, Length=177, Percent_Identity=31.638418079096, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592956, Length=182, Percent_Identity=29.6703296703297, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI46592898, Length=182, Percent_Identity=29.6703296703297, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI215820660, Length=182, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI20143975, Length=182, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI4505771, Length=165, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI9961252, Length=165, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI6005701, Length=139, Percent_Identity=32.3741007194245, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI255708477, Length=167, Percent_Identity=31.1377245508982, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI42741659, Length=160, Percent_Identity=30.625, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI87082064, Length=198, Percent_Identity=37.8787878787879, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787370, Length=187, Percent_Identity=35.8288770053476, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787029, Length=184, Percent_Identity=32.0652173913043, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787164, Length=174, Percent_Identity=35.0574712643678, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786253, Length=144, Percent_Identity=40.9722222222222, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1790739, Length=199, Percent_Identity=29.1457286432161, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87081834, Length=183, Percent_Identity=30.0546448087432, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788225, Length=162, Percent_Identity=33.9506172839506, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788165, Length=172, Percent_Identity=31.3953488372093, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790467, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=167, Percent_Identity=33.5329341317365, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786803, Length=193, Percent_Identity=30.5699481865285, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787792, Length=192, Percent_Identity=31.7708333333333, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786563, Length=180, Percent_Identity=32.2222222222222, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87081709, Length=152, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788210, Length=199, Percent_Identity=29.6482412060301, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789873, Length=195, Percent_Identity=31.2820512820513, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787182, Length=150, Percent_Identity=35.3333333333333, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787089, Length=201, Percent_Identity=28.8557213930348, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1790544, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787712, Length=148, Percent_Identity=32.4324324324324, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=175, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI1787758, Length=168, Percent_Identity=30.3571428571429, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789891, Length=170, Percent_Identity=31.1764705882353, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1788506, Length=175, Percent_Identity=32.5714285714286, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790190, Length=174, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789586, Length=194, Percent_Identity=30.9278350515464, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI2367384, Length=158, Percent_Identity=31.6455696202532, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1788897, Length=158, Percent_Identity=30.379746835443, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=176, Percent_Identity=32.9545454545455, Blast_Score=86, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17541710, Length=166, Percent_Identity=33.7349397590361, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=160, Percent_Identity=30, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=152, Percent_Identity=29.6052631578947, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=152, Percent_Identity=29.6052631578947, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=152, Percent_Identity=29.6052631578947, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=140, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=151, Percent_Identity=27.1523178807947, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920532, Length=184, Percent_Identity=32.0652173913043, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24580930, Length=184, Percent_Identity=32.0652173913043, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28574533, Length=184, Percent_Identity=28.804347826087, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648314, Length=171, Percent_Identity=29.2397660818713, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666092, Length=186, Percent_Identity=28.494623655914, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007184, Length=176, Percent_Identity=27.8409090909091, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85724864, Length=182, Percent_Identity=29.1208791208791, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580555, Length=182, Percent_Identity=29.1208791208791, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85816269, Length=182, Percent_Identity=29.1208791208791, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580553, Length=182, Percent_Identity=29.1208791208791, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221500365, Length=176, Percent_Identity=28.4090909090909, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85724858, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85724856, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580547, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580551, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580549, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580545, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17136662, Length=189, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24662800, Length=181, Percent_Identity=32.0441988950276, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161076682, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI161076684, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581617, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581615, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221512771, Length=180, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574744, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCMA_RHOP2 (Q2J3F7)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_483914.1
- ProteinModelPortal:   Q2J3F7
- SMR:   Q2J3F7
- STRING:   Q2J3F7
- GeneID:   3907920
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0292
- eggNOG:   COG4133
- HOGENOM:   HBG758042
- OMA:   VRRPIWL
- ProtClustDB:   PRK13539
- BioCyc:   RPAL316058:RPB_0292-MONOMER
- HAMAP:   MF_01707
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR005895
- InterPro:   IPR003593
- PANTHER:   PTHR19222:SF5
- SMART:   SM00382
- TIGRFAMs:   TIGR01189

Pfam domain/function: PF00005 ABC_tran

EC number: =3.6.3.41

Molecular weight: Translated: 21107; Mature: 21107

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2; PS51243 CCMA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSID
CCCCCCCCHHHHCCHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC
FDGSEPDTPVAEQAHYLGHRDALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGLSHAA
CCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVRGQAMFARLMSDHLASGGLIV
HCCHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
AATHSPLGITTREMRIGAAA
EECCCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MRLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSID
CCCCCCCCHHHHCCHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC
FDGSEPDTPVAEQAHYLGHRDALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGLSHAA
CCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVRGQAMFARLMSDHLASGGLIV
HCCHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
AATHSPLGITTREMRIGAAA
EECCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA