| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yhjE [H]
Identifier: 86747369
GI number: 86747369
Start: 276777
End: 278084
Strand: Direct
Name: yhjE [H]
Synonym: RPB_0243
Alternate gene names: 86747369
Gene position: 276777-278084 (Clockwise)
Preceding gene: 86747361
Following gene: 86747370
Centisome position: 5.19
GC content: 65.44
Gene sequence:
>1308_bases ATGACAGAAACCACGACGGCGGGACTTGGCTCTGATCCGGCGCACAAGCAGGCCAACCCCGGCGAGATTGCGATCGGCGT CATCATCGGGCGCACCGCCGAATTCTTCGACTTCTTCGTCTACGCGATCGCCTCGGTGATCGTGTTTCCGCGGCTGGTGT TTCCGTTCGCCAGCGAGCTGACCGGCACGCTGTATGCGTTCGCGATCTTCGCCGTCGCCTTCATTGCGCGGCCGCTCGGC ACCGTGATCTTCATGGCGATCGACCGCCGCTATGGCAAAAGCGCCAAGCTGATCAGCGCGATGCTGCTGCTCGGCACCGC CACGGTCGCGATCGCCTTCCTGCCCGGCTATTCCGAAATCGGCGCGGCCTCGATCTGGCTCTTGGCGCTGGCGCGTGCGG CGCAGGGTCTCGCCTGGGGCGGCGCCTGGGATGGTATGGCATCGTTGCTGGCGCTCAACGCCCCCAAGGAGCAGCGCGGC TGGTACGCGATGGTGCCGCAGCTTGGCGCGCCGCTCGGGTTGATCGTCGCGAGCGCGCTGTTCGCCTATTTCACCGGTCA TTTGTCGTCGGAGGACTTCTTCGGCTGGGGCTGGCGCTATCCGTTCTTCGTCGCCTTCGCCATCAACGTCGTGGCGCTGT TCGCGCGGCTGCGCATGGTGGTGACGCCGGAATATGCGTCGCTGTTCGAAAGCCGCGAATTGCAGCCCAGCCGCGTTCTC GCAACGCTCGGGCACGACGGCCGCAACATCATCATCGGGGCGTTCGCACCGCTGGCGAGCTTCGCCCTGTTTCATATGGT CACGGTGTTTCCGCTGTCCTGGGTGTTCCTGTTCACCCGTGAAAGCCCGGTGCGGTTCCTGATCATCGAGACCATCGGCG CGATGTTCGGCGTCGCGGCGATCATCGCGTCGGGCATGCTCGCCGATCGCATCGGCCGCAAGCCGTTGCTGATGGGCTCG GCGATCGCGATCGCGGTGTTCAGCGGCTTCGCCCCGCAGATGCTCGATGCCGGCCCGGTCGGCGAGACCGCCTATATGAT CCTCGGCTTCATTCTGCTCGGATTGTCGTTCGGCCAGTCGTCCGGCGTGATCGCTTCCAGCTTCCGGACCGCCTATCGCT ACACCGCCTCCGCGCTGACCGCCGACCTCGCCTGGCTGTTCGGCGCAGGCTTCGCCCCGCTGGTCGCCCTGCTGCTCGCC ACCGATTTCGGCCTGATCTCGTCGGGCGCCTATCTGCTGTCCGGCGCGGTGGTGACCATTCTGGCGCTGTACATCAGCGG GTTGCGGGAGTCGGAAGAATATCGTTAG
Upstream 100 bases:
>100_bases ATGTTGCGGTGCGGGATCACCGCTCAAACAGGTGGCGGATCGAGACGCCATTGAGAGGCGATCGCATCAACCTCCTCAAT CTTCACAACGGCAGCGTGCG
Downstream 100 bases:
>100_bases CCGACACGTCGCAAGCCGGCAGCGTCTTCACAACGCAAAGCGGTCCGCGGCAACGCGGGCCGCTTTTGTTTTGACAAGGT CCGCGTGCACGACGCGTTCC
Product: MFS permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MTETTTAGLGSDPAHKQANPGEIAIGVIIGRTAEFFDFFVYAIASVIVFPRLVFPFASELTGTLYAFAIFAVAFIARPLG TVIFMAIDRRYGKSAKLISAMLLLGTATVAIAFLPGYSEIGAASIWLLALARAAQGLAWGGAWDGMASLLALNAPKEQRG WYAMVPQLGAPLGLIVASALFAYFTGHLSSEDFFGWGWRYPFFVAFAINVVALFARLRMVVTPEYASLFESRELQPSRVL ATLGHDGRNIIIGAFAPLASFALFHMVTVFPLSWVFLFTRESPVRFLIIETIGAMFGVAAIIASGMLADRIGRKPLLMGS AIAIAVFSGFAPQMLDAGPVGETAYMILGFILLGLSFGQSSGVIASSFRTAYRYTASALTADLAWLFGAGFAPLVALLLA TDFGLISSGAYLLSGAVVTILALYISGLRESEEYR
Sequences:
>Translated_435_residues MTETTTAGLGSDPAHKQANPGEIAIGVIIGRTAEFFDFFVYAIASVIVFPRLVFPFASELTGTLYAFAIFAVAFIARPLG TVIFMAIDRRYGKSAKLISAMLLLGTATVAIAFLPGYSEIGAASIWLLALARAAQGLAWGGAWDGMASLLALNAPKEQRG WYAMVPQLGAPLGLIVASALFAYFTGHLSSEDFFGWGWRYPFFVAFAINVVALFARLRMVVTPEYASLFESRELQPSRVL ATLGHDGRNIIIGAFAPLASFALFHMVTVFPLSWVFLFTRESPVRFLIIETIGAMFGVAAIIASGMLADRIGRKPLLMGS AIAIAVFSGFAPQMLDAGPVGETAYMILGFILLGLSFGQSSGVIASSFRTAYRYTASALTADLAWLFGAGFAPLVALLLA TDFGLISSGAYLLSGAVVTILALYISGLRESEEYR >Mature_434_residues TETTTAGLGSDPAHKQANPGEIAIGVIIGRTAEFFDFFVYAIASVIVFPRLVFPFASELTGTLYAFAIFAVAFIARPLGT VIFMAIDRRYGKSAKLISAMLLLGTATVAIAFLPGYSEIGAASIWLLALARAAQGLAWGGAWDGMASLLALNAPKEQRGW YAMVPQLGAPLGLIVASALFAYFTGHLSSEDFFGWGWRYPFFVAFAINVVALFARLRMVVTPEYASLFESRELQPSRVLA TLGHDGRNIIIGAFAPLASFALFHMVTVFPLSWVFLFTRESPVRFLIIETIGAMFGVAAIIASGMLADRIGRKPLLMGSA IAIAVFSGFAPQMLDAGPVGETAYMILGFILLGLSFGQSSGVIASSFRTAYRYTASALTADLAWLFGAGFAPLVALLLAT DFGLISSGAYLLSGAVVTILALYISGLRESEEYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=434, Percent_Identity=34.1013824884793, Blast_Score=200, Evalue=2e-52, Organism=Escherichia coli, GI1788292, Length=407, Percent_Identity=30.7125307125307, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1790550, Length=414, Percent_Identity=26.3285024154589, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1788942, Length=316, Percent_Identity=27.2151898734177, Blast_Score=89, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 46443; Mature: 46312
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETTTAGLGSDPAHKQANPGEIAIGVIIGRTAEFFDFFVYAIASVIVFPRLVFPFASEL CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGTLYAFAIFAVAFIARPLGTVIFMAIDRRYGKSAKLISAMLLLGTATVAIAFLPGYSEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH GAASIWLLALARAAQGLAWGGAWDGMASLLALNAPKEQRGWYAMVPQLGAPLGLIVASAL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHCCCEEECHHHCCCHHHHHHHHH FAYFTGHLSSEDFFGWGWRYPFFVAFAINVVALFARLRMVVTPEYASLFESRELQPSRVL HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH ATLGHDGRNIIIGAFAPLASFALFHMVTVFPLSWVFLFTRESPVRFLIIETIGAMFGVAA HHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHH IIASGMLADRIGRKPLLMGSAIAIAVFSGFAPQMLDAGPVGETAYMILGFILLGLSFGQS HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCC SGVIASSFRTAYRYTASALTADLAWLFGAGFAPLVALLLATDFGLISSGAYLLSGAVVTI CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHH LALYISGLRESEEYR HHHHHHHHCCCCCCC >Mature Secondary Structure TETTTAGLGSDPAHKQANPGEIAIGVIIGRTAEFFDFFVYAIASVIVFPRLVFPFASEL CCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGTLYAFAIFAVAFIARPLGTVIFMAIDRRYGKSAKLISAMLLLGTATVAIAFLPGYSEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH GAASIWLLALARAAQGLAWGGAWDGMASLLALNAPKEQRGWYAMVPQLGAPLGLIVASAL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHCCCEEECHHHCCCHHHHHHHHH FAYFTGHLSSEDFFGWGWRYPFFVAFAINVVALFARLRMVVTPEYASLFESRELQPSRVL HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH ATLGHDGRNIIIGAFAPLASFALFHMVTVFPLSWVFLFTRESPVRFLIIETIGAMFGVAA HHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHH IIASGMLADRIGRKPLLMGSAIAIAVFSGFAPQMLDAGPVGETAYMILGFILLGLSFGQS HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCC SGVIASSFRTAYRYTASALTADLAWLFGAGFAPLVALLLATDFGLISSGAYLLSGAVVTI CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHH LALYISGLRESEEYR HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]