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The map label for this gene is ydhC [H]

Identifier: 86747361

GI number: 86747361

Start: 268853

End: 269656

Strand: Direct

Name: ydhC [H]

Synonym: RPB_0235

Alternate gene names: 86747361

Gene position: 268853-269656 (Clockwise)

Preceding gene: 86747352

Following gene: 86747369

Centisome position: 5.04

GC content: 69.4

Gene sequence:

>804_bases
GTGGCAGCGACGTATCGCAGGCCGGCGACCGGGAGTGACGGCACCCACGAGCGGCGGTTCGCGCCGCGCACGCTGCCGGA
CCAGGTCGCCGAAGAACTCGGCGCCGAGATTGTCTCGGGCCGACGCAAGGCGGGCGAGCGCCTCGTCGAACTCGATCTGG
CGCGCGACTTCGGCGTCAGTCGCGGGCCGATCCGCGAAGCGATTCGGATTCTCGAACGTCGCCGGCTGGTCGAATTGCTG
CCGCGGCGCGGCGCCTACATCAAGCCGGTGTCGCTGAAATCAGTCGCCGATCTGTTCAACGTCCGCACCGCGCTGTCGAT
GCTGGCGGTGCGGACCATGGCGACCACGCCGGTCGAGAGCTACATCGACACGCTCGCGCGACGCTGCGCGGAATTGAAGG
CGCAGGTCGAGCCCGACGATCCGATCGCCTTCGCGCGGACCACGACGCGGGCGGTCAAGACCATTGCGCGCGGCTCCGGC
AATCAGTTGCTGGTCGAACTGCTCACCGACCTCGCCGACCAGACCGTGTGGACGACGATCTGGAAATCGCCGCTGGACTA
CCAGACGCCGGAGATTCGGCGGCTCAGCGCCGACCTGATGGCGTCGACGCTGAAGGCAATCCGGCAGCGCAGGCCGAACG
CGGCCGTGACCCATCTCGGCGAATTGCTGGAAGGCGACCGCGACCGCGCGCTGGCGACGCTGTCGCAGATCCGCGGCGAG
GCCTTCGACCTCAGCGCGCTGGCGCATGTCGATGAGACCGGCGCGGCGCCCACGACCATTGCGGGCAGCGCCCGGACGGC
CTGA

Upstream 100 bases:

>100_bases
TGCCCACTAATCAAAAGCCATCGATTGTCGATTGTCAACAATTGACTGTTGGGCTATTTTGTCCCGCGTGGCGGAAGGAT
CGAGAGTGGTGGGGGAAAAC

Downstream 100 bases:

>100_bases
GGGCTCGGGCCGGGACGCTGCGCCTACCTGACCTGCCGCTTTTCGAGCTTGCGCGCCAGGGTCCGGCGATGCATGCCGAG
CCGCCGCGCAGCCTCGGAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MAATYRRPATGSDGTHERRFAPRTLPDQVAEELGAEIVSGRRKAGERLVELDLARDFGVSRGPIREAIRILERRRLVELL
PRRGAYIKPVSLKSVADLFNVRTALSMLAVRTMATTPVESYIDTLARRCAELKAQVEPDDPIAFARTTTRAVKTIARGSG
NQLLVELLTDLADQTVWTTIWKSPLDYQTPEIRRLSADLMASTLKAIRQRRPNAAVTHLGELLEGDRDRALATLSQIRGE
AFDLSALAHVDETGAAPTTIAGSARTA

Sequences:

>Translated_267_residues
MAATYRRPATGSDGTHERRFAPRTLPDQVAEELGAEIVSGRRKAGERLVELDLARDFGVSRGPIREAIRILERRRLVELL
PRRGAYIKPVSLKSVADLFNVRTALSMLAVRTMATTPVESYIDTLARRCAELKAQVEPDDPIAFARTTTRAVKTIARGSG
NQLLVELLTDLADQTVWTTIWKSPLDYQTPEIRRLSADLMASTLKAIRQRRPNAAVTHLGELLEGDRDRALATLSQIRGE
AFDLSALAHVDETGAAPTTIAGSARTA
>Mature_266_residues
AATYRRPATGSDGTHERRFAPRTLPDQVAEELGAEIVSGRRKAGERLVELDLARDFGVSRGPIREAIRILERRRLVELLP
RRGAYIKPVSLKSVADLFNVRTALSMLAVRTMATTPVESYIDTLARRCAELKAQVEPDDPIAFARTTTRAVKTIARGSGN
QLLVELLTDLADQTVWTTIWKSPLDYQTPEIRRLSADLMASTLKAIRQRRPNAAVTHLGELLEGDRDRALATLSQIRGEA
FDLSALAHVDETGAAPTTIAGSARTA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29335; Mature: 29204

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATYRRPATGSDGTHERRFAPRTLPDQVAEELGAEIVSGRRKAGERLVELDLARDFGVS
CCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RGPIREAIRILERRRLVELLPRRGAYIKPVSLKSVADLFNVRTALSMLAVRTMATTPVES
CCHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
YIDTLARRCAELKAQVEPDDPIAFARTTTRAVKTIARGSGNQLLVELLTDLADQTVWTTI
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
WKSPLDYQTPEIRRLSADLMASTLKAIRQRRPNAAVTHLGELLEGDRDRALATLSQIRGE
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC
AFDLSALAHVDETGAAPTTIAGSARTA
HHHHHHHHHHHHCCCCCCEECCCCCCC
>Mature Secondary Structure 
AATYRRPATGSDGTHERRFAPRTLPDQVAEELGAEIVSGRRKAGERLVELDLARDFGVS
CCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RGPIREAIRILERRRLVELLPRRGAYIKPVSLKSVADLFNVRTALSMLAVRTMATTPVES
CCHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
YIDTLARRCAELKAQVEPDDPIAFARTTTRAVKTIARGSGNQLLVELLTDLADQTVWTTI
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
WKSPLDYQTPEIRRLSADLMASTLKAIRQRRPNAAVTHLGELLEGDRDRALATLSQIRGE
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC
AFDLSALAHVDETGAAPTTIAGSARTA
HHHHHHHHHHHHCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]