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The map label for this gene is ybfI [H]

Identifier: 86747336

GI number: 86747336

Start: 236229

End: 237053

Strand: Direct

Name: ybfI [H]

Synonym: RPB_0210

Alternate gene names: 86747336

Gene position: 236229-237053 (Clockwise)

Preceding gene: 86747335

Following gene: 86747341

Centisome position: 4.43

GC content: 66.3

Gene sequence:

>825_bases
ATGTCGTCACATTCCTTGCAGATCGCCGGCGAACGAGTCTGTGCGCGCCATGCGGCCGGCGTATCTTCCGCGAGTTCGAT
GGGGCGATGTCAGCAGCCGGACGAGGTCTGGTCCGGGCACTTGCGGAACCGCGAGCGATCGAATTTCGATTTGAAGAAAA
TGGCCGCGTTGATTCGGGCCCTCACCGCCGAAGGTGGTGCGACGCCCGGAATCGTGAGCGGCTTGCGGCCGCCGGCCGCG
AGCGGCGGCGAGACGGTGCTGAATTTCCGCGATCGGAGTGAAGGCCGTCCGGGCCCGGGTGATCCGCCCTGTACGGATGA
CGACCCATTAGTGATCCGGCTGTCGGAAGCATTGGCGGCCGCCGAGTGCGATTCGTCGGAATTCGCCGACCTCTACGCCG
ATGCGATCCGCGTCGTCACGGCCGTGCGGAAGCTGAGCATGCAGCCGCCGGCCGCGCTAATCGAGGACCGGAAGCCGACC
GGCGGCGCGGTGTTGCCGAAGTGGCGGCTGAAGCTGGTCGCCAATTATGTCTCCGAGCATCTCGCGGAGAAGGTGACGCT
GGCCGACATGGCGGCGGCGGCGCGGTTGAGCCGGATGCATTTCGCCGCACTGTTCCTGCGCGCGACCGGGCTGCGGCCTC
ATGAATATCTGCTGAAGCGGCGCATCGCCGCGGCGCAGGAGCTGCTGCAGACGGGCGATCTGCCGATCGTCCAGGTCGCC
ATGCAGGTCGGATTCCAGACCCAGGCGCACTTCACCACCGTGTTCAAGAGGATCACGGGCCACACCCCGGCGAAGTGGCG
ACAGACGATGCGGCCACACGACTGA

Upstream 100 bases:

>100_bases
CGCATACCCAAGTATAATCCTCGGCTCGGTCCAACTCCACATATGAGAGAAGCAACGTCGCGCTTCTCGGTGCGTCGACG
TCGAGTTGGGGAGCGCACTG

Downstream 100 bases:

>100_bases
CTCCTCACGCGCTCCCGTGCGGACTTTGGTAGCGCGACGGCATTCCCGGTCCGATCGAATCATACCCGGCACGATGGTCT
TCGCGGTCCGGCTGCGAGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSSHSLQIAGERVCARHAAGVSSASSMGRCQQPDEVWSGHLRNRERSNFDLKKMAALIRALTAEGGATPGIVSGLRPPAA
SGGETVLNFRDRSEGRPGPGDPPCTDDDPLVIRLSEALAAAECDSSEFADLYADAIRVVTAVRKLSMQPPAALIEDRKPT
GGAVLPKWRLKLVANYVSEHLAEKVTLADMAAAARLSRMHFAALFLRATGLRPHEYLLKRRIAAAQELLQTGDLPIVQVA
MQVGFQTQAHFTTVFKRITGHTPAKWRQTMRPHD

Sequences:

>Translated_274_residues
MSSHSLQIAGERVCARHAAGVSSASSMGRCQQPDEVWSGHLRNRERSNFDLKKMAALIRALTAEGGATPGIVSGLRPPAA
SGGETVLNFRDRSEGRPGPGDPPCTDDDPLVIRLSEALAAAECDSSEFADLYADAIRVVTAVRKLSMQPPAALIEDRKPT
GGAVLPKWRLKLVANYVSEHLAEKVTLADMAAAARLSRMHFAALFLRATGLRPHEYLLKRRIAAAQELLQTGDLPIVQVA
MQVGFQTQAHFTTVFKRITGHTPAKWRQTMRPHD
>Mature_273_residues
SSHSLQIAGERVCARHAAGVSSASSMGRCQQPDEVWSGHLRNRERSNFDLKKMAALIRALTAEGGATPGIVSGLRPPAAS
GGETVLNFRDRSEGRPGPGDPPCTDDDPLVIRLSEALAAAECDSSEFADLYADAIRVVTAVRKLSMQPPAALIEDRKPTG
GAVLPKWRLKLVANYVSEHLAEKVTLADMAAAARLSRMHFAALFLRATGLRPHEYLLKRRIAAAQELLQTGDLPIVQVAM
QVGFQTQAHFTTVFKRITGHTPAKWRQTMRPHD

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29761; Mature: 29630

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHSLQIAGERVCARHAAGVSSASSMGRCQQPDEVWSGHLRNRERSNFDLKKMAALIRA
CCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
LTAEGGATPGIVSGLRPPAASGGETVLNFRDRSEGRPGPGDPPCTDDDPLVIRLSEALAA
HHHCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH
AECDSSEFADLYADAIRVVTAVRKLSMQPPAALIEDRKPTGGAVLPKWRLKLVANYVSEH
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LAEKVTLADMAAAARLSRMHFAALFLRATGLRPHEYLLKRRIAAAQELLQTGDLPIVQVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MQVGFQTQAHFTTVFKRITGHTPAKWRQTMRPHD
HHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure 
SSHSLQIAGERVCARHAAGVSSASSMGRCQQPDEVWSGHLRNRERSNFDLKKMAALIRA
CCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
LTAEGGATPGIVSGLRPPAASGGETVLNFRDRSEGRPGPGDPPCTDDDPLVIRLSEALAA
HHHCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH
AECDSSEFADLYADAIRVVTAVRKLSMQPPAALIEDRKPTGGAVLPKWRLKLVANYVSEH
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LAEKVTLADMAAAARLSRMHFAALFLRATGLRPHEYLLKRRIAAAQELLQTGDLPIVQVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MQVGFQTQAHFTTVFKRITGHTPAKWRQTMRPHD
HHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]