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The map label for this gene is cydB [H]

Identifier: 86747332

GI number: 86747332

Start: 232024

End: 233049

Strand: Direct

Name: cydB [H]

Synonym: RPB_0206

Alternate gene names: 86747332

Gene position: 232024-233049 (Clockwise)

Preceding gene: 86747331

Following gene: 86747333

Centisome position: 4.35

GC content: 66.18

Gene sequence:

>1026_bases
ATGAGCATGCTGTCAGGCTTTGATTTTGCGGTGTTCTTCGCCGTCGGCGCGGCTGTCGTGATCGGCCTCTACGTCGTGCT
CGACGGCGTCGATCTCGGCGTCGGCATCCTGTTTCCATTCGCGCCGCGCTCGTCCGACCGCGATCTGATGATGGCGACGC
TCGAGCCGTTCTGGGACGGCAACGAGACCTGGCTGGTGCTCGGCGGCATGGTGCTGCTGGCCGGATTTCCGCTGGCCTTC
GCGATCCTGCTGCCGGCCTTCTATGTGCCGCTGTGCTTGATGCTGTTCGGCCTGGTGATCCGCGGCATCGCGTTCGAGTT
CCGCTCGCAGGGCGGTCCGTTCGAAATTGCTTGGTCGACCACCTTCGCGGTCGGGTCCTTCATCGCGGCGTTCTGCCAGG
GCGCCATCCTCGGCGCCTTCGTCGGGCGCTATATCGCCGTGGTGGACGGCGCCTTTGCGGGCGGCCCGTTCGACTGGCTC
GGGCTGTTTTCGATCGCGACCGGGCTCGGCGTGGTTGCCGGATATGGTCTGCTGGGCGCTTGCTGGCTGATCTGGAAGAC
CGGCGGCGCCACACAGATGTTCGCCCGCGAACTGGTGCTGCCGACGCTGCTGTGCGTCGGCGCCGCGATTCTGCTGATCA
GTGTGTGGACGCCGTTCGTGAAGCCGCAGATCGCCGACCGCTGGTTTGCCTGGCCGGACTTCGTGTGGCTGGCACCGATG
CCGATCGTGGCCGTGGCGGCCTGGCTTGGAGTCTGGCTGACGCGCTGGAGCGAACGCGAATGGGCGCCGCTGGCGCTGTC
GTTGTTGCTTTTCATGGCGTCGCTCGCAGGGCTGGGCGCCAGCGTTTGGCCGGAGGCGGTGCCCGGGTCGATGACGATCT
GGCAGGCGTCCTCGATGCACCGGACCCAACTGATCGTCGCCGGCGCGCTGGTGATCGTGATGCCGATCATCCTGGCCTAT
ATCGGCTACGGCTATTGGCTGTTCCGGGGCAAGACCAGGCCCGCGCCAGATCTTCGCCAGAACTGA

Upstream 100 bases:

>100_bases
TGCGCGGCCCGATGAGCGGCGTCCCCACCCATCCCGCCGTGCCGATGGCGACCGTCGCGGCCGCGCTCGGACAGGGTTCT
CGAACCACCGAAGGTGCACG

Downstream 100 bases:

>100_bases
CGATCACGGGGGAAATCACTTGTCCGATGATCGAGGTCAGGCCGGATCGGCGTCACAATCGGGTGCCTGGCGCCGTCTGG
CGATTCCGTTGCTCGCCGTC

Product: cytochrome bd ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSMLSGFDFAVFFAVGAAVVIGLYVVLDGVDLGVGILFPFAPRSSDRDLMMATLEPFWDGNETWLVLGGMVLLAGFPLAF
AILLPAFYVPLCLMLFGLVIRGIAFEFRSQGGPFEIAWSTTFAVGSFIAAFCQGAILGAFVGRYIAVVDGAFAGGPFDWL
GLFSIATGLGVVAGYGLLGACWLIWKTGGATQMFARELVLPTLLCVGAAILLISVWTPFVKPQIADRWFAWPDFVWLAPM
PIVAVAAWLGVWLTRWSEREWAPLALSLLLFMASLAGLGASVWPEAVPGSMTIWQASSMHRTQLIVAGALVIVMPIILAY
IGYGYWLFRGKTRPAPDLRQN

Sequences:

>Translated_341_residues
MSMLSGFDFAVFFAVGAAVVIGLYVVLDGVDLGVGILFPFAPRSSDRDLMMATLEPFWDGNETWLVLGGMVLLAGFPLAF
AILLPAFYVPLCLMLFGLVIRGIAFEFRSQGGPFEIAWSTTFAVGSFIAAFCQGAILGAFVGRYIAVVDGAFAGGPFDWL
GLFSIATGLGVVAGYGLLGACWLIWKTGGATQMFARELVLPTLLCVGAAILLISVWTPFVKPQIADRWFAWPDFVWLAPM
PIVAVAAWLGVWLTRWSEREWAPLALSLLLFMASLAGLGASVWPEAVPGSMTIWQASSMHRTQLIVAGALVIVMPIILAY
IGYGYWLFRGKTRPAPDLRQN
>Mature_340_residues
SMLSGFDFAVFFAVGAAVVIGLYVVLDGVDLGVGILFPFAPRSSDRDLMMATLEPFWDGNETWLVLGGMVLLAGFPLAFA
ILLPAFYVPLCLMLFGLVIRGIAFEFRSQGGPFEIAWSTTFAVGSFIAAFCQGAILGAFVGRYIAVVDGAFAGGPFDWLG
LFSIATGLGVVAGYGLLGACWLIWKTGGATQMFARELVLPTLLCVGAAILLISVWTPFVKPQIADRWFAWPDFVWLAPMP
IVAVAAWLGVWLTRWSEREWAPLALSLLLFMASLAGLGASVWPEAVPGSMTIWQASSMHRTQLIVAGALVIVMPIILAYI
GYGYWLFRGKTRPAPDLRQN

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=359, Percent_Identity=26.7409470752089, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787213, Length=370, Percent_Identity=25.4054054054054, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36863; Mature: 36732

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLSGFDFAVFFAVGAAVVIGLYVVLDGVDLGVGILFPFAPRSSDRDLMMATLEPFWDG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCCHHHEECCCCCCC
NETWLVLGGMVLLAGFPLAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQGGPFEIAWST
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
TFAVGSFIAAFCQGAILGAFVGRYIAVVDGAFAGGPFDWLGLFSIATGLGVVAGYGLLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
CWLIWKTGGATQMFARELVLPTLLCVGAAILLISVWTPFVKPQIADRWFAWPDFVWLAPM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHCCH
PIVAVAAWLGVWLTRWSEREWAPLALSLLLFMASLAGLGASVWPEAVPGSMTIWQASSMH
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHH
RTQLIVAGALVIVMPIILAYIGYGYWLFRGKTRPAPDLRQN
HHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SMLSGFDFAVFFAVGAAVVIGLYVVLDGVDLGVGILFPFAPRSSDRDLMMATLEPFWDG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCCHHHEECCCCCCC
NETWLVLGGMVLLAGFPLAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQGGPFEIAWST
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
TFAVGSFIAAFCQGAILGAFVGRYIAVVDGAFAGGPFDWLGLFSIATGLGVVAGYGLLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
CWLIWKTGGATQMFARELVLPTLLCVGAAILLISVWTPFVKPQIADRWFAWPDFVWLAPM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHCCH
PIVAVAAWLGVWLTRWSEREWAPLALSLLLFMASLAGLGASVWPEAVPGSMTIWQASSMH
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHH
RTQLIVAGALVIVMPIILAYIGYGYWLFRGKTRPAPDLRQN
HHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]