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The map label for this gene is araC [C]

Identifier: 86747319

GI number: 86747319

Start: 217410

End: 218393

Strand: Direct

Name: araC [C]

Synonym: RPB_0193

Alternate gene names: 86747319

Gene position: 217410-218393 (Clockwise)

Preceding gene: 86747316

Following gene: 86747322

Centisome position: 4.08

GC content: 58.54

Gene sequence:

>984_bases
ATGACGACGTCGGGAGCTAATAATGTCCGAGTCGCCGATTCGTGTCGAAGCTGGAGAACTGCATTGGCCGAACCGAAGAG
GGTGTCTGCGGTGGACCGTGCAAGCGAAGAGGTCGGGAGGCCCCCCCGCTCCGCGATCAGGTCATGGGGTCAAAGGAAGA
TCGAGGCGGGATACTGGTCGATCGATTGGCCGGGCGTCATTCAGAGGGAGATGTCTCTCTCCACCAGGGCCTTCTGCGAA
CTATCGATGGTGTTGACGCCTGTGGACGACATGACCCTACTCCGCGGTGAAACAACCATAAGAACCGGCCCGCTTCAGAG
CGGACGATTTCGCGTCGCGCCCGCCAACGCCGCACTATCGGCCAGCGTTTCGGCGAGTGGTCCCGTCAAATTCCTGAAAG
TATTCTTCGCGGAGGAGACGGCGCGCGCGATCGGCTCGGCGATCCATTCTCATTCGATCGATATCGAACTGGAAGATCCG
ATGCTGGGCACGAACGACCCGCTCCTGGTCGCGCTCGGCAGAGAAGTCGTCGAAAACATGAATGATCCCAGGCCGACCAA
CCGCGCCTTCGCCGAAGAAGCGGCCATCTTGATGGCTGGAAGGGTCGTTTCCCACTATTCGACAGCACGCTACTGCACCA
GCATCGCGGTTCGATCTCCCGGTCTGGATCCCAATCTGGACAGAGCGCTGCAGCTGATGCGGGATCACATCGGTGATTCC
ATCGATCTCGGGATGCTTGCGGCGTCCGTCGACATGTCGGCATTCTCCTTTGTCCGCGCCTTCAAGAAGAAATACGGTTT
GCCTCCAATTCGGTATCATCGCGGGATGAGGATCGAGTGGGCGAAGACGCTGCTATCAACGACAGCGTGCCCGGTTGGCA
AGATATCGAACATGCTGGGTTTCAGTGAACCGAGTCATTTCGTTTCAGCGTTTCGGAAGACGACGGGTTGCACGCCACTG
GCTTATCGCCGGTTTCGAAGCTGA

Upstream 100 bases:

>100_bases
TAGTTCGCACATTAGGTCGTCCGGCGCCCGAAGAAGCGAGGCGGTTCCCGGTTCGCGCTGGGAAATCGGGCCTGATCCGG
ATTGATCAGGGGCAATCACC

Downstream 100 bases:

>100_bases
TCCCGCTCGCATTGCGGTTTCATGGCTCGGATACACTCCTCTTGATACTCCTTCGAGGAGTGGGCCTATTCCGTCACTTT
GGTGACTGCGATTGCGGCTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; AraC-Family Transcriptional Regulator; Helix-Turn-Helix AraC Type; Two-Component Response Regulator; AraC Family Regulatory Protein; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein; Transcription Regulator

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MTTSGANNVRVADSCRSWRTALAEPKRVSAVDRASEEVGRPPRSAIRSWGQRKIEAGYWSIDWPGVIQREMSLSTRAFCE
LSMVLTPVDDMTLLRGETTIRTGPLQSGRFRVAPANAALSASVSASGPVKFLKVFFAEETARAIGSAIHSHSIDIELEDP
MLGTNDPLLVALGREVVENMNDPRPTNRAFAEEAAILMAGRVVSHYSTARYCTSIAVRSPGLDPNLDRALQLMRDHIGDS
IDLGMLAASVDMSAFSFVRAFKKKYGLPPIRYHRGMRIEWAKTLLSTTACPVGKISNMLGFSEPSHFVSAFRKTTGCTPL
AYRRFRS

Sequences:

>Translated_327_residues
MTTSGANNVRVADSCRSWRTALAEPKRVSAVDRASEEVGRPPRSAIRSWGQRKIEAGYWSIDWPGVIQREMSLSTRAFCE
LSMVLTPVDDMTLLRGETTIRTGPLQSGRFRVAPANAALSASVSASGPVKFLKVFFAEETARAIGSAIHSHSIDIELEDP
MLGTNDPLLVALGREVVENMNDPRPTNRAFAEEAAILMAGRVVSHYSTARYCTSIAVRSPGLDPNLDRALQLMRDHIGDS
IDLGMLAASVDMSAFSFVRAFKKKYGLPPIRYHRGMRIEWAKTLLSTTACPVGKISNMLGFSEPSHFVSAFRKTTGCTPL
AYRRFRS
>Mature_326_residues
TTSGANNVRVADSCRSWRTALAEPKRVSAVDRASEEVGRPPRSAIRSWGQRKIEAGYWSIDWPGVIQREMSLSTRAFCEL
SMVLTPVDDMTLLRGETTIRTGPLQSGRFRVAPANAALSASVSASGPVKFLKVFFAEETARAIGSAIHSHSIDIELEDPM
LGTNDPLLVALGREVVENMNDPRPTNRAFAEEAAILMAGRVVSHYSTARYCTSIAVRSPGLDPNLDRALQLMRDHIGDSI
DLGMLAASVDMSAFSFVRAFKKKYGLPPIRYHRGMRIEWAKTLLSTTACPVGKISNMLGFSEPSHFVSAFRKTTGCTPLA
YRRFRS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786251, Length=105, Percent_Identity=31.4285714285714, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35927; Mature: 35795

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSGANNVRVADSCRSWRTALAEPKRVSAVDRASEEVGRPPRSAIRSWGQRKIEAGYWS
CCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
IDWPGVIQREMSLSTRAFCELSMVLTPVDDMTLLRGETTIRTGPLQSGRFRVAPANAALS
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCEEEECCCCCCCEEEEECCCHHE
ASVSASGPVKFLKVFFAEETARAIGSAIHSHSIDIELEDPMLGTNDPLLVALGREVVENM
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHCCHHHHHCC
NDPRPTNRAFAEEAAILMAGRVVSHYSTARYCTSIAVRSPGLDPNLDRALQLMRDHIGDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
IDLGMLAASVDMSAFSFVRAFKKKYGLPPIRYHRGMRIEWAKTLLSTTACPVGKISNMLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC
FSEPSHFVSAFRKTTGCTPLAYRRFRS
CCCHHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
TTSGANNVRVADSCRSWRTALAEPKRVSAVDRASEEVGRPPRSAIRSWGQRKIEAGYWS
CCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
IDWPGVIQREMSLSTRAFCELSMVLTPVDDMTLLRGETTIRTGPLQSGRFRVAPANAALS
CCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHHHCCCCEEEECCCCCCCEEEEECCCHHE
ASVSASGPVKFLKVFFAEETARAIGSAIHSHSIDIELEDPMLGTNDPLLVALGREVVENM
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHCCHHHHHCC
NDPRPTNRAFAEEAAILMAGRVVSHYSTARYCTSIAVRSPGLDPNLDRALQLMRDHIGDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
IDLGMLAASVDMSAFSFVRAFKKKYGLPPIRYHRGMRIEWAKTLLSTTACPVGKISNMLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC
FSEPSHFVSAFRKTTGCTPLAYRRFRS
CCCHHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA