| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is glnD [H]
Identifier: 86747159
GI number: 86747159
Start: 30131
End: 32929
Strand: Direct
Name: glnD [H]
Synonym: RPB_0032
Alternate gene names: 86747159
Gene position: 30131-32929 (Clockwise)
Preceding gene: 86747155
Following gene: 86747160
Centisome position: 0.57
GC content: 66.6
Gene sequence:
>2799_bases ATGGACAAAGTCGTGACACCTCAACGGCCGGCCGCCGACGAGCGGTTCGATACAACGCGGATCACCGCCGACATCGCGGC GCTGGCCGGGCAGCATGCCGGCAACGAGCCGACGTTCCGCACCGCGCTCGCGCAACTCATGAAGGCCGAACTCGCCAAGG CCCGCGCGGCGGCCGAGGCGCAGTTGCTGCGTGACCGCCACGGCCGGCGCTGTGCCGAGCATCTGTGCTTCGTCCAGGAC GAGATCATCCGGCTGCTGTTCATGGCGGCGACTCAATATCTTTACAATTCGCCGACGCCGTCGAGCTCGGAGCGGATGTC GGTGGTCGCCACCGGCGGCTACGGCCGCGGCCTGATGGCGCCGGAGAGCGACATCGATCTGCTGTTCATCCTGCCCTACA AGCAGACCGCCTGGGGCGAGCAGGTCGCCGAGGTGATCCTGTATTGCCTGTGGGACATCGGTCTCAAGGTCGGCCACGCC ACCCGCTCGGTCGACGAGTCGATCCGTCAGGCCCGGGCCGACATGACGATCCGCACCGCGATCCTGGAAACCCGCTTCCT GACCGGCGACAAGGCGCTGTATCAGGAACTGGTCGACCGCTTCGACAAGGAAGTGGTCGAGGGCACCGCCGCCGAATTCG TCACCGCCAAGCTCGCCGAGCGCGAGGAGCGGCATCGCCGCTCCGGCCAGTCGCGCTATCTGGTCGAGCCCAACGTCAAG GACGGCAAGGGCGGCTTGCGCGACCTGCACACGCTGTTCTGGATCGCCAAATACGTCTACCGCGTTCGCGGCACCAGCGA ACTGCTCGAACACGGCGTGTTCGACCAGATCGAATTCCGCACCTTCCGCCGCTGCGAGGATTTCCTCTGGTCGGTGCGCT GCAATCTGCATTTCGTGACGCGGCGCGCCGAGGAGCGGCTGTCGTTCGACCTGCAGCGCGAGATCGGCGTGCGGCTCGGC TACACCTCGCATCCCGGGATGCAGGACGTCGAGCGCTTCATGAAGCACTACTTCCTGATCGCCAAGAAGGTCGGCAATCT GACCGCTATCCTGTGCGCCAAGCTCGAGGACCAGCAGGCCAAGCCGGCGCCGGCGCTGTCGCGGATGATGGCGCGGCTGC GGCCCGGCGCGACGCGACGCCGGGTACCCGAGAGCGACGACTTCGTCATCGACAACAACCGCATCAATTGCGCGATGCCG GACGTGTTCAAGCACGACCCGGTCAATCTGATCCGGATCTTCCGGTTGGCGCAGAAGAACAACCTCGCCTTCCATCCCGA CGCGATGCGGACGGTGACGCGCTCGCTGGCACTGATCAACGCCCAGCTCCGCGACGATCCCGAGGCCAATCGACTGTTCA TCGAGATCCTGACCTCGGACAATGCCGAACAGGTGCTGCGGCGGATGAACGAGACCGGCGTGCTCGGCCGCTTCATCCGC GCCTTCGGCCGCATCGTCTCGATGATGCAGTTCAACATGTATCACAGCTACACGGTGGACGAGCATCTGCTGCGCTGTGT CGGCAACCTCCAGGAGATCGAGCGCGGCGGCAACGACGAGTTCATCCTGTCGTCCGACCTGATCCGCAAGATCCGCCCCG ACCACCGTGCGGTGCTGTATGTCGCGGTGCTGCTGCACGACATCGCCAAGGGCCAGCCGGAGGACCACTCCACCGCCGGC GCCAAGGTGGCGCGGCGGCTGTGCCCGCGGTTCGGCTTCAACGCCGCCGACACCGAACTGATCGCCTGGCTGATCGACAA GCATCTGGTGATGTCCACCGTGGCGCAATCACGCGACCTGTCGGACCGCAAGACCATCGAGAATTTCGCCGCCGTGGTCG AGTCGGTCGAGCAGATGAAGCTCTTGACCATCCTCACCACCGCCGACATTCGCGGCGTCGGCCCGGGCGTCTGGAACGGC TGGAAGGCGCAGCTGTTGCGCACGCTGTATTACGAGACCGAGCCGGTGCTGACCGGCGGCTTCTCCGAGGTCAACCGCGC CGAGCGCATCCGCGGCGCGCAGGCGGAATTCCGCGCCAATTTCACCGAATGGCCGGCGGCCGAGCTCGACGCCTACGTGG CGCGGCACTACCCGGCGTACTGGCTCAAGGTCGAGCTGGCGCGCAAGATCCGCCACGCCCGCTTCCTGCGCGCCTCCGAA CAGGCCGGCCACAAGCTCGCGGTCAATGTCGGCTTCGACGAGGCGCGCGGCGTCACCGAACTGACGATCCTGGCGGTCGA CCATCCCTGGCTGCTGTCGATCATCGCCGGCGCCTGCGCCTCGGCCGGCGCCAACATCGTCGACGCCCAGATCTACACCA CCACCGACGGCCGCGCGCTCGACACCATCTCGATCAGCCGCGAATACGATCGCGACGAGGACGAGGGCCGCCGCGCGACG CGGATCGGCGAGATGATCGAGGAAGTGCTGGAAGGCAAGCTGCGGCTGCCCGAAGCGGTGGCGCGGCGCGCCACCAACGG CCGCGCCAAGCTGCGCGCCTTCGTGGTCGAGCCGGAAGTCTCGATCAATAACAATTGGTCGGACCGCTACACCGTGATCG AGGTCAGTGGCCTCGACCGCCCCGGCCTGCTGTATCAGCTCACCACCGCGATCTCGAAGCTGAACCTCAACATCGCCTCG GCGCATGTCGCCACCTTCGGCGAACGCGCCCGCGACGTGTTCTACGTCACCGATCTGCTCGGCGCCCAGATCACCGCGCC GACCCGGCAGGCCGCGATCAAGCGCGCGCTGGTTCACCTGCTCGCCAATGGCGACGCGGAGCAACAGCCGGCGGCGTGA
Upstream 100 bases:
>100_bases CCCGCCGGCCCGAACCGACGCATGGCGGGCGATCAGCCGTTCGGCCCTGATCACGCGGAATTTCGTGACAGCGCGGGCGG CGTCCGATATCCGGAGTCGC
Downstream 100 bases:
>100_bases GCCGGGCGGGCCGGCAAGCCGGTTCGCCGCATCGTCCTCTGACATCGACCGAGATCACCAGACCGAGCGTCGCGACGGCG GCGCCGCACGCGGCCGCAGG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 932; Mature: 932
Protein sequence:
>932_residues MDKVVTPQRPAADERFDTTRITADIAALAGQHAGNEPTFRTALAQLMKAELAKARAAAEAQLLRDRHGRRCAEHLCFVQD EIIRLLFMAATQYLYNSPTPSSSERMSVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHA TRSVDESIRQARADMTIRTAILETRFLTGDKALYQELVDRFDKEVVEGTAAEFVTAKLAEREERHRRSGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVRGTSELLEHGVFDQIEFRTFRRCEDFLWSVRCNLHFVTRRAEERLSFDLQREIGVRLG YTSHPGMQDVERFMKHYFLIAKKVGNLTAILCAKLEDQQAKPAPALSRMMARLRPGATRRRVPESDDFVIDNNRINCAMP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRTVTRSLALINAQLRDDPEANRLFIEILTSDNAEQVLRRMNETGVLGRFIR AFGRIVSMMQFNMYHSYTVDEHLLRCVGNLQEIERGGNDEFILSSDLIRKIRPDHRAVLYVAVLLHDIAKGQPEDHSTAG AKVARRLCPRFGFNAADTELIAWLIDKHLVMSTVAQSRDLSDRKTIENFAAVVESVEQMKLLTILTTADIRGVGPGVWNG WKAQLLRTLYYETEPVLTGGFSEVNRAERIRGAQAEFRANFTEWPAAELDAYVARHYPAYWLKVELARKIRHARFLRASE QAGHKLAVNVGFDEARGVTELTILAVDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEGRRAT RIGEMIEEVLEGKLRLPEAVARRATNGRAKLRAFVVEPEVSINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIAS AHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDAEQQPAA
Sequences:
>Translated_932_residues MDKVVTPQRPAADERFDTTRITADIAALAGQHAGNEPTFRTALAQLMKAELAKARAAAEAQLLRDRHGRRCAEHLCFVQD EIIRLLFMAATQYLYNSPTPSSSERMSVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHA TRSVDESIRQARADMTIRTAILETRFLTGDKALYQELVDRFDKEVVEGTAAEFVTAKLAEREERHRRSGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVRGTSELLEHGVFDQIEFRTFRRCEDFLWSVRCNLHFVTRRAEERLSFDLQREIGVRLG YTSHPGMQDVERFMKHYFLIAKKVGNLTAILCAKLEDQQAKPAPALSRMMARLRPGATRRRVPESDDFVIDNNRINCAMP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRTVTRSLALINAQLRDDPEANRLFIEILTSDNAEQVLRRMNETGVLGRFIR AFGRIVSMMQFNMYHSYTVDEHLLRCVGNLQEIERGGNDEFILSSDLIRKIRPDHRAVLYVAVLLHDIAKGQPEDHSTAG AKVARRLCPRFGFNAADTELIAWLIDKHLVMSTVAQSRDLSDRKTIENFAAVVESVEQMKLLTILTTADIRGVGPGVWNG WKAQLLRTLYYETEPVLTGGFSEVNRAERIRGAQAEFRANFTEWPAAELDAYVARHYPAYWLKVELARKIRHARFLRASE QAGHKLAVNVGFDEARGVTELTILAVDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEGRRAT RIGEMIEEVLEGKLRLPEAVARRATNGRAKLRAFVVEPEVSINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIAS AHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDAEQQPAA >Mature_932_residues MDKVVTPQRPAADERFDTTRITADIAALAGQHAGNEPTFRTALAQLMKAELAKARAAAEAQLLRDRHGRRCAEHLCFVQD EIIRLLFMAATQYLYNSPTPSSSERMSVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHA TRSVDESIRQARADMTIRTAILETRFLTGDKALYQELVDRFDKEVVEGTAAEFVTAKLAEREERHRRSGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVRGTSELLEHGVFDQIEFRTFRRCEDFLWSVRCNLHFVTRRAEERLSFDLQREIGVRLG YTSHPGMQDVERFMKHYFLIAKKVGNLTAILCAKLEDQQAKPAPALSRMMARLRPGATRRRVPESDDFVIDNNRINCAMP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRTVTRSLALINAQLRDDPEANRLFIEILTSDNAEQVLRRMNETGVLGRFIR AFGRIVSMMQFNMYHSYTVDEHLLRCVGNLQEIERGGNDEFILSSDLIRKIRPDHRAVLYVAVLLHDIAKGQPEDHSTAG AKVARRLCPRFGFNAADTELIAWLIDKHLVMSTVAQSRDLSDRKTIENFAAVVESVEQMKLLTILTTADIRGVGPGVWNG WKAQLLRTLYYETEPVLTGGFSEVNRAERIRGAQAEFRANFTEWPAAELDAYVARHYPAYWLKVELARKIRHARFLRASE QAGHKLAVNVGFDEARGVTELTILAVDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEGRRAT RIGEMIEEVLEGKLRLPEAVARRATNGRAKLRAFVVEPEVSINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIAS AHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDAEQQPAA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=846, Percent_Identity=32.387706855792, Blast_Score=384, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 105138; Mature: 105138
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKVVTPQRPAADERFDTTRITADIAALAGQHAGNEPTFRTALAQLMKAELAKARAAAEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QLLRDRHGRRCAEHLCFVQDEIIRLLFMAATQYLYNSPTPSSSERMSVVATGGYGRGLMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC PESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHATRSVDESIRQARADMTIRTA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHH ILETRFLTGDKALYQELVDRFDKEVVEGTAAEFVTAKLAEREERHRRSGQSRYLVEPNVK HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC DGKGGLRDLHTLFWIAKYVYRVRGTSELLEHGVFDQIEFRTFRRCEDFLWSVRCNLHFVT CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH RRAEERLSFDLQREIGVRLGYTSHPGMQDVERFMKHYFLIAKKVGNLTAILCAKLEDQQA HHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC KPAPALSRMMARLRPGATRRRVPESDDFVIDNNRINCAMPDVFKHDPVNLIRIFRLAQKN CCCHHHHHHHHHHCCCCHHCCCCCCCCEEEECCEEEECCCHHHCCCCHHHHHHHHHHHCC NLAFHPDAMRTVTRSLALINAQLRDDPEANRLFIEILTSDNAEQVLRRMNETGVLGRFIR CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHH AFGRIVSMMQFNMYHSYTVDEHLLRCVGNLQEIERGGNDEFILSSDLIRKIRPDHRAVLY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHCCCHHHHHH VAVLLHDIAKGQPEDHSTAGAKVARRLCPRFGFNAADTELIAWLIDKHLVMSTVAQSRDL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SDRKTIENFAAVVESVEQMKLLTILTTADIRGVGPGVWNGWKAQLLRTLYYETEPVLTGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC FSEVNRAERIRGAQAEFRANFTEWPAAELDAYVARHYPAYWLKVELARKIRHARFLRASE HHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QAGHKLAVNVGFDEARGVTELTILAVDHPWLLSIIAGACASAGANIVDAQIYTTTDGRAL HCCCEEEEEECCHHHCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE DTISISREYDRDEDEGRRATRIGEMIEEVLEGKLRLPEAVARRATNGRAKLRAFVVEPEV EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEEECCCC SINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLL CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH GAQITAPTRQAAIKRALVHLLANGDAEQQPAA CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MDKVVTPQRPAADERFDTTRITADIAALAGQHAGNEPTFRTALAQLMKAELAKARAAAEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QLLRDRHGRRCAEHLCFVQDEIIRLLFMAATQYLYNSPTPSSSERMSVVATGGYGRGLMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC PESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHATRSVDESIRQARADMTIRTA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHH ILETRFLTGDKALYQELVDRFDKEVVEGTAAEFVTAKLAEREERHRRSGQSRYLVEPNVK HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC DGKGGLRDLHTLFWIAKYVYRVRGTSELLEHGVFDQIEFRTFRRCEDFLWSVRCNLHFVT CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH RRAEERLSFDLQREIGVRLGYTSHPGMQDVERFMKHYFLIAKKVGNLTAILCAKLEDQQA HHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC KPAPALSRMMARLRPGATRRRVPESDDFVIDNNRINCAMPDVFKHDPVNLIRIFRLAQKN CCCHHHHHHHHHHCCCCHHCCCCCCCCEEEECCEEEECCCHHHCCCCHHHHHHHHHHHCC NLAFHPDAMRTVTRSLALINAQLRDDPEANRLFIEILTSDNAEQVLRRMNETGVLGRFIR CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHH AFGRIVSMMQFNMYHSYTVDEHLLRCVGNLQEIERGGNDEFILSSDLIRKIRPDHRAVLY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHCCCHHHHHH VAVLLHDIAKGQPEDHSTAGAKVARRLCPRFGFNAADTELIAWLIDKHLVMSTVAQSRDL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SDRKTIENFAAVVESVEQMKLLTILTTADIRGVGPGVWNGWKAQLLRTLYYETEPVLTGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC FSEVNRAERIRGAQAEFRANFTEWPAAELDAYVARHYPAYWLKVELARKIRHARFLRASE HHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH QAGHKLAVNVGFDEARGVTELTILAVDHPWLLSIIAGACASAGANIVDAQIYTTTDGRAL HCCCEEEEEECCHHHCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE DTISISREYDRDEDEGRRATRIGEMIEEVLEGKLRLPEAVARRATNGRAKLRAFVVEPEV EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEEECCCC SINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLL CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH GAQITAPTRQAAIKRALVHLLANGDAEQQPAA CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA