| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86610190
Identifier: 86610190
GI number: 86610190
Start: 2861533
End: 2862999
Strand: Direct
Name: 86610190
Synonym: CYB_2764
Alternate gene names: NA
Gene position: 2861533-2862999 (Clockwise)
Preceding gene: 86610189
Following gene: 86610191
Centisome position: 93.92
GC content: 60.53
Gene sequence:
>1467_bases ATGGCTGACGCAGTTCCCGTTCGGCGCTACGACCTGTTTGTGCAGGCTTCCCGGCTGCTGCAGCGCTACCGGCAGCTCAC GCCGGAACTCCGTCCCATAGGGCTAGAGGTGGCTCTGGCCATCCAGTATCACCGCGCTCAGGCCGGATCGGGATCCCTCT TGCCTTGGGTGGGATCCCCTCGCGGACTGCCCTTGCAGCAAGTGGCCCAGCGCATTTGCGACCCGTTTTACAGCAAAACC CACCCTCTTTTACCGACCTTGCCCGAAACCGGCGAGCCTTTGGTGTGGCCTCTGTTCAACCAGGGGGAAAACGGTTTGAT CCGGCCCCTGGCCCCGAGCAAAGTGGGCGGGAAACTGGCGGAACGGCGCTGGCTCAAAGCCTGCAACAGCCAGGAAGGGA TCGGCTGTCATGCCTTGGCGGCCCACTTGTGGCAAGACGAGCGCTTTTTGGCCGAAGACCGGGATCTCTGTCCTTTCCGC CTTTATGATGGGCGCTACCCCTTGAGCGTGGATCAAGGGCGGCAGACCTGCGGCTTTGACGATCACCCCTGTGGCTGGCA GCCGGGACACCCCAAAATGTTGCAGGTGGTGGGCAAAGGCAAACAGGCCGAGATCCTGCTCCCCCACTGGACGGATGACA TGTGGGCGATGCTCATTCCCTCCCATCGTCCGCTGCCGATTTACCCGCTCTTGGTGATGCTTTACTTTGGCCAGGAAACT TTGCAAAAGGGGCGGAGCAGCCTCTCCATCGAGCAATTTCGTCTGGATTTTCAGTTTAGCCAGTCTCAACTGCGCCTGTT GTTCGACACCCACCCTGAGCACCCCTTGAATCGACACCTGCTTACCTGGGCTCAGCAGCCAGAGGTGGAGTGGGGATCCA CAGAACTCTTGCCCCAGATGCCGCCCCTCCTGCATCAACCTGCTGGGGGCAAGGTGGTTTTGGATCCCGATGAGCCGCCC CAGTTCCGCAGCAGTGGGATCCCTCACAGCGCCGGGACAGACCCGCTGATGGCAGAACGCCGCCGTCGCCGTCAGTTGGA GCGCAGCGAACGCCACAACGAGATCTTGCACCAGTTTCGCCGCTGGTTCCGCCTGGCAGGATTGGAAGTCCGGGAGGATC AGCATACCTTTGACTTTTTGGCCGTGGCGGACGGGCATCTGCTTTTGGCCGAAGTAAAGCTCCTGCACCACAAGGATGCG GCAGAGGCTTTGCAGGAAGTGGTGGGACAGTTGCTCTACTACGAGCGCTTTGCCCTCGGCCCTTGGATCGAGCAGGGCTT TTCCGTTCAGAAGGCCGCCGTTTTCGATGGGCCACCGCCAGATCCCTATGTGCGATTTCTAGAAGACCTGGGCATTGCTA CCTACTGGATCAACGAGCAGCAGATGATCGATGGGCCGGAAAACTCTTTGCGTCTGCTGCGCCAGATGGGGGTGCGGGTA CGACCGGATCCCGAATTGGGGGATTAG
Upstream 100 bases:
>100_bases GGTCTGCAGAGACAGTTGCCAAGGTCTCATTTCTTGAGGCCATGGTGCTTGTCTGTGCCAGCTCTTGCCCAAGGCAGTGG GGAGCTTTTCCTGCAACACT
Downstream 100 bases:
>100_bases GGGAAAAAGCCTGCCCATGTTCTCCCCTGAGTTTTGACTCAGGCGGGGGTAACTTCTTGTCTTCTTAAGCGTACCTTAAC TGCCCCTTTACTCAGATTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGLEVALAIQYHRAQAGSGSLLPWVGSPRGLPLQQVAQRICDPFYSKT HPLLPTLPETGEPLVWPLFNQGENGLIRPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFR LYDGRYPLSVDQGRQTCGFDDHPCGWQPGHPKMLQVVGKGKQAEILLPHWTDDMWAMLIPSHRPLPIYPLLVMLYFGQET LQKGRSSLSIEQFRLDFQFSQSQLRLLFDTHPEHPLNRHLLTWAQQPEVEWGSTELLPQMPPLLHQPAGGKVVLDPDEPP QFRSSGIPHSAGTDPLMAERRRRRQLERSERHNEILHQFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDA AEALQEVVGQLLYYERFALGPWIEQGFSVQKAAVFDGPPPDPYVRFLEDLGIATYWINEQQMIDGPENSLRLLRQMGVRV RPDPELGD
Sequences:
>Translated_488_residues MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGLEVALAIQYHRAQAGSGSLLPWVGSPRGLPLQQVAQRICDPFYSKT HPLLPTLPETGEPLVWPLFNQGENGLIRPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFR LYDGRYPLSVDQGRQTCGFDDHPCGWQPGHPKMLQVVGKGKQAEILLPHWTDDMWAMLIPSHRPLPIYPLLVMLYFGQET LQKGRSSLSIEQFRLDFQFSQSQLRLLFDTHPEHPLNRHLLTWAQQPEVEWGSTELLPQMPPLLHQPAGGKVVLDPDEPP QFRSSGIPHSAGTDPLMAERRRRRQLERSERHNEILHQFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDA AEALQEVVGQLLYYERFALGPWIEQGFSVQKAAVFDGPPPDPYVRFLEDLGIATYWINEQQMIDGPENSLRLLRQMGVRV RPDPELGD >Mature_487_residues ADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGLEVALAIQYHRAQAGSGSLLPWVGSPRGLPLQQVAQRICDPFYSKTH PLLPTLPETGEPLVWPLFNQGENGLIRPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRL YDGRYPLSVDQGRQTCGFDDHPCGWQPGHPKMLQVVGKGKQAEILLPHWTDDMWAMLIPSHRPLPIYPLLVMLYFGQETL QKGRSSLSIEQFRLDFQFSQSQLRLLFDTHPEHPLNRHLLTWAQQPEVEWGSTELLPQMPPLLHQPAGGKVVLDPDEPPQ FRSSGIPHSAGTDPLMAERRRRRQLERSERHNEILHQFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAA EALQEVVGQLLYYERFALGPWIEQGFSVQKAAVFDGPPPDPYVRFLEDLGIATYWINEQQMIDGPENSLRLLRQMGVRVR PDPELGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55853; Mature: 55721
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGLEVALAIQYHRAQAGSGSLLPWVGSP CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCC RGLPLQQVAQRICDPFYSKTHPLLPTLPETGEPLVWPLFNQGENGLIRPLAPSKVGGKLA CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH ERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRLYDGRYPLSVDQGRQTCGFD HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC DHPCGWQPGHPKMLQVVGKGKQAEILLPHWTDDMWAMLIPSHRPLPIYPLLVMLYFGQET CCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHCHHH LQKGRSSLSIEQFRLDFQFSQSQLRLLFDTHPEHPLNRHLLTWAQQPEVEWGSTELLPQM HHHCHHCCCHHHHEECHHCCCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC PPLLHQPAGGKVVLDPDEPPQFRSSGIPHSAGTDPLMAERRRRRQLERSERHNEILHQFR CHHHCCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAAEALQEVVGQLLYYERFALG HHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC PWIEQGFSVQKAAVFDGPPPDPYVRFLEDLGIATYWINEQQMIDGPENSLRLLRQMGVRV HHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCHHHCCCCHHHHHHHHHCCCEE RPDPELGD CCCCCCCC >Mature Secondary Structure ADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGLEVALAIQYHRAQAGSGSLLPWVGSP CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCC RGLPLQQVAQRICDPFYSKTHPLLPTLPETGEPLVWPLFNQGENGLIRPLAPSKVGGKLA CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH ERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRLYDGRYPLSVDQGRQTCGFD HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC DHPCGWQPGHPKMLQVVGKGKQAEILLPHWTDDMWAMLIPSHRPLPIYPLLVMLYFGQET CCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHCHHH LQKGRSSLSIEQFRLDFQFSQSQLRLLFDTHPEHPLNRHLLTWAQQPEVEWGSTELLPQM HHHCHHCCCHHHHEECHHCCCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC PPLLHQPAGGKVVLDPDEPPQFRSSGIPHSAGTDPLMAERRRRRQLERSERHNEILHQFR CHHHCCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAAEALQEVVGQLLYYERFALG HHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC PWIEQGFSVQKAAVFDGPPPDPYVRFLEDLGIATYWINEQQMIDGPENSLRLLRQMGVRV HHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCHHHCCCCHHHHHHHHHCCCEE RPDPELGD CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA