Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86610172

Identifier: 86610172

GI number: 86610172

Start: 2840998

End: 2842233

Strand: Direct

Name: 86610172

Synonym: CYB_2746

Alternate gene names: NA

Gene position: 2840998-2842233 (Clockwise)

Preceding gene: 86610171

Following gene: 86610173

Centisome position: 93.25

GC content: 61.97

Gene sequence:

>1236_bases
ATGTTCCCTGAGCCCTCCCAATTTAGGAAGCGGCAGGGATCCCTTCGAGGCTGGGGCTATCTCGGCGGGGTGGTGTTCCT
GGCAACGGGACTGGTCGGTCTGCCGTCAGGGGATCCAGCCGTGGCCCAATCGGCTCCCTCTTCTCTTGCCAGCCCTAAGC
AGGATCCCCAAGCTTGGCTGGAGCGCTACAACGCCGCTCTAGAGCAATTGCCCCCTTTGCCCAACTTGCAATATCGCCAG
CAGGTGCGGGTGGAGGGATCCCAAACCTTCACAGCCACGTTGGATGTGCTCTACCGCCGCGACGGCAGTTGGCAGGCTTG
GGTAGCCGAAGGGGATCGCATCCGCCTCTTGGATTCGCGCCAATTGGAAGTGGTGAACCAGTCGGATCTGCTGCAGCTGT
ACTCGGTGTATGTGAGCCGACCGGAAGCCCTCTTGCCCTCGGTGAGCTTTTACTTGAAGGCGGATCCCAGCCGCTACCGC
GTCCTCTCCTCAGAACGGGTGGATTTGGCTGGATCCCCTGTCCAGCACTTGCGCCTAGAGCCCATTCAGGAAGGCCAGTT
GCGGGAGCTGTGGCTGGATCCGCAGTCGGGGCTGCCGCGGCAGGTGTTGCTGTTTTTGTCGGGGGTGTGGGGGCAGGCCT
ATGTCCTGATGGGGTTTACGGCGGTGCCAGCTCCCGAGGGAGGGGAGCGCTACTGGCTGCCGGAGAGCACCCGCATCAAT
TTGGGCTATGGCTTTTGGACCCTGGAGGGCCTGAACCGCCGCGTGTTCAGGGGATCCCTGTCCATCCAGCATGACTACCA
GGACTACCGCATTTTGCCAGAAGGGACGCAGTTGCGCTTTTTGCCTTCGCAGCCGCCGGTGGATGCGCCGCCGGTGGTAG
CCGGCCTGCCGGGGAGCGCTCCTCAAGCGGAGTTGGGAGATGTGCGGGCCTTGGGAGTGGATGAGCAGGGCAACCAGCAG
TTCAGCATTGGCCTGGGCCGGCGCTCCAGCCCGGACAATTCCTTGGAAGACCGAATCGTTGCTTTCAACCTAACCCGACC
CACCAGCCGCAACGCCCTGACCCAAATCGATACTTTAGCTCTTTTGCCTCTGGGGAATGGCCAGTTGCCCATCTATCTCT
TCCAATTCGACACCGGTCGCCCCCTCTCGCCCCTGCAGGGGGTAGAGCGCCCGCAGGTGGATCCCAACGAGGTCTTCGCT
CCTAAGCCGCCAGCCATCAAACTCTTTGGAGATTAG

Upstream 100 bases:

>100_bases
GATCCCTTCCGAACGCTTTCTCTCAGGTGTGGGAAGCGCTCTGATCCGGGCACAAGCAGCGACAAGAAGGGCAGCAAGAG
CGGTGTTGCGAGGTGAGCTG

Downstream 100 bases:

>100_bases
CTCCCCAATGCTGATAGATGCTGCCTATGGGGTGATCCCCATCCTGCCCCACCCACCCGCCCAGGAAGCTCCCGGACCCG
GCTCTTCGCATTTGTATCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MFPEPSQFRKRQGSLRGWGYLGGVVFLATGLVGLPSGDPAVAQSAPSSLASPKQDPQAWLERYNAALEQLPPLPNLQYRQ
QVRVEGSQTFTATLDVLYRRDGSWQAWVAEGDRIRLLDSRQLEVVNQSDLLQLYSVYVSRPEALLPSVSFYLKADPSRYR
VLSSERVDLAGSPVQHLRLEPIQEGQLRELWLDPQSGLPRQVLLFLSGVWGQAYVLMGFTAVPAPEGGERYWLPESTRIN
LGYGFWTLEGLNRRVFRGSLSIQHDYQDYRILPEGTQLRFLPSQPPVDAPPVVAGLPGSAPQAELGDVRALGVDEQGNQQ
FSIGLGRRSSPDNSLEDRIVAFNLTRPTSRNALTQIDTLALLPLGNGQLPIYLFQFDTGRPLSPLQGVERPQVDPNEVFA
PKPPAIKLFGD

Sequences:

>Translated_411_residues
MFPEPSQFRKRQGSLRGWGYLGGVVFLATGLVGLPSGDPAVAQSAPSSLASPKQDPQAWLERYNAALEQLPPLPNLQYRQ
QVRVEGSQTFTATLDVLYRRDGSWQAWVAEGDRIRLLDSRQLEVVNQSDLLQLYSVYVSRPEALLPSVSFYLKADPSRYR
VLSSERVDLAGSPVQHLRLEPIQEGQLRELWLDPQSGLPRQVLLFLSGVWGQAYVLMGFTAVPAPEGGERYWLPESTRIN
LGYGFWTLEGLNRRVFRGSLSIQHDYQDYRILPEGTQLRFLPSQPPVDAPPVVAGLPGSAPQAELGDVRALGVDEQGNQQ
FSIGLGRRSSPDNSLEDRIVAFNLTRPTSRNALTQIDTLALLPLGNGQLPIYLFQFDTGRPLSPLQGVERPQVDPNEVFA
PKPPAIKLFGD
>Mature_411_residues
MFPEPSQFRKRQGSLRGWGYLGGVVFLATGLVGLPSGDPAVAQSAPSSLASPKQDPQAWLERYNAALEQLPPLPNLQYRQ
QVRVEGSQTFTATLDVLYRRDGSWQAWVAEGDRIRLLDSRQLEVVNQSDLLQLYSVYVSRPEALLPSVSFYLKADPSRYR
VLSSERVDLAGSPVQHLRLEPIQEGQLRELWLDPQSGLPRQVLLFLSGVWGQAYVLMGFTAVPAPEGGERYWLPESTRIN
LGYGFWTLEGLNRRVFRGSLSIQHDYQDYRILPEGTQLRFLPSQPPVDAPPVVAGLPGSAPQAELGDVRALGVDEQGNQQ
FSIGLGRRSSPDNSLEDRIVAFNLTRPTSRNALTQIDTLALLPLGNGQLPIYLFQFDTGRPLSPLQGVERPQVDPNEVFA
PKPPAIKLFGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45621; Mature: 45621

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPEPSQFRKRQGSLRGWGYLGGVVFLATGLVGLPSGDPAVAQSAPSSLASPKQDPQAWL
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCEECCCCCCHHHHCCCHHHCCCCCCHHHHH
ERYNAALEQLPPLPNLQYRQQVRVEGSQTFTATLDVLYRRDGSWQAWVAEGDRIRLLDSR
HHHHHHHHHCCCCCCCCCHHEEEECCCCEEEEEEEEEEECCCCEEEEEECCCEEEEECCC
QLEVVNQSDLLQLYSVYVSRPEALLPSVSFYLKADPSRYRVLSSERVDLAGSPVQHLRLE
CEEEECHHHHHHHHHHHHCCCHHHCCCEEEEEECCCHHEEEECCCCCCCCCCCHHHEECC
PIQEGQLRELWLDPQSGLPRQVLLFLSGVWGQAYVLMGFTAVPAPEGGERYWLPESTRIN
CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEECCCCCEEE
LGYGFWTLEGLNRRVFRGSLSIQHDYQDYRILPEGTQLRFLPSQPPVDAPPVVAGLPGSA
EEECEEEECCCCCEEEECCEEEEECCCCCEECCCCCEEEEECCCCCCCCCCEEECCCCCC
PQAELGDVRALGVDEQGNQQFSIGLGRRSSPDNSLEDRIVAFNLTRPTSRNALTQIDTLA
CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHEEEEE
LLPLGNGQLPIYLFQFDTGRPLSPLQGVERPQVDPNEVFAPKPPAIKLFGD
EEECCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCC
>Mature Secondary Structure
MFPEPSQFRKRQGSLRGWGYLGGVVFLATGLVGLPSGDPAVAQSAPSSLASPKQDPQAWL
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCEECCCCCCHHHHCCCHHHCCCCCCHHHHH
ERYNAALEQLPPLPNLQYRQQVRVEGSQTFTATLDVLYRRDGSWQAWVAEGDRIRLLDSR
HHHHHHHHHCCCCCCCCCHHEEEECCCCEEEEEEEEEEECCCCEEEEEECCCEEEEECCC
QLEVVNQSDLLQLYSVYVSRPEALLPSVSFYLKADPSRYRVLSSERVDLAGSPVQHLRLE
CEEEECHHHHHHHHHHHHCCCHHHCCCEEEEEECCCHHEEEECCCCCCCCCCCHHHEECC
PIQEGQLRELWLDPQSGLPRQVLLFLSGVWGQAYVLMGFTAVPAPEGGERYWLPESTRIN
CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEECCCCCEEE
LGYGFWTLEGLNRRVFRGSLSIQHDYQDYRILPEGTQLRFLPSQPPVDAPPVVAGLPGSA
EEECEEEECCCCCEEEECCEEEEECCCCCEECCCCCEEEEECCCCCCCCCCEEECCCCCC
PQAELGDVRALGVDEQGNQQFSIGLGRRSSPDNSLEDRIVAFNLTRPTSRNALTQIDTLA
CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHEEEEE
LLPLGNGQLPIYLFQFDTGRPLSPLQGVERPQVDPNEVFAPKPPAIKLFGD
EEECCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA