Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86610170

Identifier: 86610170

GI number: 86610170

Start: 2838369

End: 2840609

Strand: Direct

Name: 86610170

Synonym: CYB_2744

Alternate gene names: NA

Gene position: 2838369-2840609 (Clockwise)

Preceding gene: 86610168

Following gene: 86610171

Centisome position: 93.16

GC content: 45.29

Gene sequence:

>2241_bases
ATGAATTTACTCCAGAAGAAAGTTGAGGTTACTCTTAATCGCTTCTTCGTCAAGGAGCTAACTCAAGAAGAGCTCACCTT
CTATGAGTATAGTTGCAGGCCAAACCCTCTTCCAGATCTAGGAGAGGAGCAGAGGGCTCTCTCCAAGATTTGTAATCAGC
TAGGTGTAATGGCTGTTCGTCTGGGAAATCGCATCATAACCCGAGAAAAAGTTCCGGCCAGTAAACTCAAAACAGAGGAA
TGGGAGTTGGAAGAGCTTGGTTCTAAGGCTCTAGATTGTACAGACCCTACAGAGAGACAGGCTCTAGAAACTTTCGAGCG
CAAGAAACTAGATTGGAGTCTAAGATCTAAGTACAAAAGAACAGAGATTGAGCGATCAACAGGAGGAGGATTGATCTGGT
GGGTTACGGGTCTGGAAGGAGTAGAACGGATTGAGGACTCGGAAGGAGTAAAACCACTTTGCGGAGATGGGTGGGAGGTT
CACAGAGGAAGAGAGCTAGACGTTGTTATTAGACAAGATAAGAAGCTCTATCTAGAGATCGACATCCGATACCATTTCTA
CAGCCCATGGACGCTGCATGAGTGGCTGGAAAATTACCCAGATGTCTCAATTGAAATTGTACGAAACACATACAGGACAA
AAAATAATAAATACCCAACTTGGGAGTATCGAGGCATTATTTCCAATCAGTCGCCAAGGGAAGTATGGTTAGCGGAGCTA
AACACTAGCTTAGCGGATTATCATGTACAGAAGTACGGAGCAACTCCAGAAGAAGTTGATGGCTCTCTGGTGGTTCAAGT
GGTCTCGAGAGAACGCAATTTCAGACAAAAGGCAGAGCCTATCCTTCATCTATCGCGGAGACTGTCGCCTGTTTTAACTT
TGGAGATGCTAGCAAGTATAGAAGATCAAAGATGGACTGGCAAAAAAGTTAGCTCCTTGGTTAGCGAGCACATCAGAAAA
AGTTTAGAAGAGAGATTGAAAGAGTCTAAAGAGACCGCAAAAACTATTATAGAAAATGTCTACAATATTTCTGACTTTCA
GGCTGATCCCCTAAAAGCAGAAGGATACATTATGCCAAGTCCAAGGCTATTGGGGTTTGGTCATAGACAAGTCCAAAACC
CCGCGAGAGTTAGGTACCAAGGATGTGCAAGAGTTGGCGAGACAAAGTTTGGACTTCTAAATCTTGACGATAATAAACGT
GAGTATCCTACTGAGGTTCGCAAGTGCCTACTTGAAGTAGCTAAAAAGAGCGGAGCAAGAGTTGAAATAGACTTTTACGC
AACCCGTCAAGATTTGCCTGAAGGCGACCTTGCTCAACAGAGGTTTTGGCAAAGCTGGGCCGACAAAGGGATCAAAACCG
TTCTGGTTGTCATGCCCTTGTCGCCTAATGAGCACAAGCAAAAGATCCGCTTGCAAGCACTTCGAGCAGGAATAGCAACT
CAGTTTATGATTCCTGGAGCTGACCCCTACAAAGCTCTAAATGTCGTACTAGGACTTCTGTGTAAAGCTGCGTGGCAACC
CGTGTTGCTTGAACCCCTCGATCATCCTGAGTGCTCCGAGCTTACCATTGGTTTTGATGTGGGGACGAATCGAGAGCTTT
ACTACGGAACCTCTGCCTTCGCGGTACTGGCCAATGGTCAAAGCTTAGGCTGGGAGTTGCCCGATATACAAAGAGGAGAA
ACTTTTTCCGGCGAGGCAATTTATCAAACCGTGTCCAAGCTCGTCAATAGATTCTACAACAAATTTCATCGATACCCTAG
AAAGGTTCTTTTGATGAGGGATGGCTTAGTTCAAAGAGGCGAATTTGATAAAACAATTGAGGAACTAAGAAAAGAAAAGA
TTGCTGTGGATATTGTTGGAGTGCGCAAAAGTGGCACAGTCAGAATGGGAAGAGAGGAAAAAGGAAGCTATAGAGACGCT
GCAATGGGCACTGTCATTTTTGACCATGAACGAAGGTCATTTATGCTCGTAACAAGCCAGCCCATTAAGAAGTCCTCGGT
GCCAATTGGCAGCGCAAGACCGCTGCGAGTTGTCCATGAACACGGCAACACTCCTTTGGAAGTTCTGGCTATACAAACTT
ACCATCTCTCCCAGCTTCATCCCGCCAGTGGTTTTCAAGCCTGTAGGCTTCCTTGGGTATTGCACTTTGCCGACAAAAGC
AGTAAAGAGTTCCAGCGCATTGGCAACAGCATTTTTAGTGTGCTGCAGAACATAAACCGAGAGAAGTTGATTGCCGTCTA
G

Upstream 100 bases:

>100_bases
TTGGCTCCGCCAGGGTTGTTTGGAGATCCCTCGTGAAGAGCAGGAGAATTAGAGCTTATCCTAGAGATCCTAGAGAGAAA
CTTGAAACTAGAGTCTGCCA

Downstream 100 bases:

>100_bases
CCAAGGGAGGGGATCCCCACCTGCCGGCCTTGCTAGGATTGGGGGGGTGGTTGGTGTTGCGGCTATGGAGATGAATGAGG
TCTGGAAGACCTTTCTGAGC

Product: piwi domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 746; Mature: 746

Protein sequence:

>746_residues
MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVRLGNRIITREKVPASKLKTEE
WELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKRTEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEV
HRGRELDVVIRQDKKLYLEIDIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL
NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASIEDQRWTGKKVSSLVSEHIRK
SLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPSPRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKR
EYPTEVRKCLLEVAKKSGARVEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT
QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAFAVLANGQSLGWELPDIQRGE
TFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRGEFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDA
AMGTVIFDHERRSFMLVTSQPIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS
SKEFQRIGNSIFSVLQNINREKLIAV

Sequences:

>Translated_746_residues
MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVRLGNRIITREKVPASKLKTEE
WELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKRTEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEV
HRGRELDVVIRQDKKLYLEIDIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL
NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASIEDQRWTGKKVSSLVSEHIRK
SLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPSPRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKR
EYPTEVRKCLLEVAKKSGARVEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT
QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAFAVLANGQSLGWELPDIQRGE
TFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRGEFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDA
AMGTVIFDHERRSFMLVTSQPIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS
SKEFQRIGNSIFSVLQNINREKLIAV
>Mature_746_residues
MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVRLGNRIITREKVPASKLKTEE
WELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKRTEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEV
HRGRELDVVIRQDKKLYLEIDIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL
NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASIEDQRWTGKKVSSLVSEHIRK
SLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPSPRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKR
EYPTEVRKCLLEVAKKSGARVEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT
QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAFAVLANGQSLGWELPDIQRGE
TFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRGEFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDA
AMGTVIFDHERRSFMLVTSQPIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS
SKEFQRIGNSIFSVLQNINREKLIAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85745; Mature: 85745

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LGNRIITREKVPASKLKTEEWELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKR
HCCEEEECCCCCHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
TEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEVHRGRELDVVIRQDKKLYLEI
HHHCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEEE
DIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL
EEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH
NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASI
HCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EDQRWTGKKVSSLVSEHIRKSLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPS
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCC
PRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKREYPTEVRKCLLEVAKKSGAR
CCEECCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
VEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT
EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHH
QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAF
EEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEE
AVLANGQSLGWELPDIQRGETFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRG
EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEHHHCCCCCCC
EFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDAAMGTVIFDHERRSFMLVTSQ
CHHHHHHHHHHHCEEEEEEEECCCCCEEECCCCCCCCHHHHHCEEEEECCCCEEEEEECC
PIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS
CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEHHCCCCCCCCCCHHCCCEEEEECCCC
SKEFQRIGNSIFSVLQNINREKLIAV
HHHHHHHHHHHHHHHHCCCHHHEECC
>Mature Secondary Structure
MNLLQKKVEVTLNRFFVKELTQEELTFYEYSCRPNPLPDLGEEQRALSKICNQLGVMAVR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LGNRIITREKVPASKLKTEEWELEELGSKALDCTDPTERQALETFERKKLDWSLRSKYKR
HCCEEEECCCCCHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
TEIERSTGGGLIWWVTGLEGVERIEDSEGVKPLCGDGWEVHRGRELDVVIRQDKKLYLEI
HHHCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEEE
DIRYHFYSPWTLHEWLENYPDVSIEIVRNTYRTKNNKYPTWEYRGIISNQSPREVWLAEL
EEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH
NTSLADYHVQKYGATPEEVDGSLVVQVVSRERNFRQKAEPILHLSRRLSPVLTLEMLASI
HCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EDQRWTGKKVSSLVSEHIRKSLEERLKESKETAKTIIENVYNISDFQADPLKAEGYIMPS
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCC
PRLLGFGHRQVQNPARVRYQGCARVGETKFGLLNLDDNKREYPTEVRKCLLEVAKKSGAR
CCEECCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
VEIDFYATRQDLPEGDLAQQRFWQSWADKGIKTVLVVMPLSPNEHKQKIRLQALRAGIAT
EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHH
QFMIPGADPYKALNVVLGLLCKAAWQPVLLEPLDHPECSELTIGFDVGTNRELYYGTSAF
EEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEE
AVLANGQSLGWELPDIQRGETFSGEAIYQTVSKLVNRFYNKFHRYPRKVLLMRDGLVQRG
EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEHHHCCCCCCC
EFDKTIEELRKEKIAVDIVGVRKSGTVRMGREEKGSYRDAAMGTVIFDHERRSFMLVTSQ
CHHHHHHHHHHHCEEEEEEEECCCCCEEECCCCCCCCHHHHHCEEEEECCCCEEEEEECC
PIKKSSVPIGSARPLRVVHEHGNTPLEVLAIQTYHLSQLHPASGFQACRLPWVLHFADKS
CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEHHCCCCCCCCCCHHCCCEEEEECCCC
SKEFQRIGNSIFSVLQNINREKLIAV
HHHHHHHHHHHHHHHHCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA