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The map label for this gene is psbV

Identifier: 86609971

GI number: 86609971

Start: 2643154

End: 2643696

Strand: Direct

Name: psbV

Synonym: CYB_2537

Alternate gene names: 86609971

Gene position: 2643154-2643696 (Clockwise)

Preceding gene: 86609969

Following gene: 86609972

Centisome position: 86.76

GC content: 55.06

Gene sequence:

>543_bases
ATGTTTAGCAAAGCTTTTTCTTTTCAGAAGGTGTTTGCGCCAGCGCGTCGTCGGTTGCTTGTCCTGCTGTTGGCTGCGTT
GATGGCTGGGTTTGGCTGGGGTCTGGCTCCAGTGTTTGCAGCTAGGGATATTCCTGCAGTGGCTCTGTCGCCAACTGAGT
CTATTACCTTTACCGAAGCCCAGTTGGCCAAAGGGAAGAAGCTATTCAACACCGCATGCGCCCAGTGCCATGTGGGCGGC
CAGACCTATCCCAACCCGGATGTGAGCTTGAAGCTTTCGGATCTGGAGGGGGCAACTCCCCCACGGGATAATGTGCTGGC
GATTGTGGATTACATCAAGAATCCAGTCACCTATGACGGGGTGGAGTCTCTGTTGGAGTATCACCCCAACACCCAGCTCA
CCAGTGAGTATCCACGTCTGCGCAACCTCACCGACGAGGATCTGAAGCTGATTGCGGGCTACATTCTGGTGCAGGCCAAG
ACCGTTCCCGGCTGGGGTGGTACCAAGAACGAAAGCCACAGCGACCTATCAGCCTATCTCTAA

Upstream 100 bases:

>100_bases
TGCAAATGATCTCTTAATGGTCTATTCTTGATCCTGTTGTCGGGTTTGTGGCTGGAGTGGAGCCCACCTCTCCTCTTTCT
AGGCTGATCTACGGAGAACC

Downstream 100 bases:

>100_bases
TGCCGCATCTGGATCAGAAGTTGCCTATGAGATGGCGGATCCCGTCTCGCCTCTGGGCCTGGGTCGGGATCCTAGCTTTG
TTGTGGCTGGGGCTGGCCAG

Product: cytochrome c-550

Products: NA

Alternate protein names: Cytochrome c550; Low-potential cytochrome c

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MFSKAFSFQKVFAPARRRLLVLLLAALMAGFGWGLAPVFAARDIPAVALSPTESITFTEAQLAKGKKLFNTACAQCHVGG
QTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLLEYHPNTQLTSEYPRLRNLTDEDLKLIAGYILVQAK
TVPGWGGTKNESHSDLSAYL

Sequences:

>Translated_180_residues
MFSKAFSFQKVFAPARRRLLVLLLAALMAGFGWGLAPVFAARDIPAVALSPTESITFTEAQLAKGKKLFNTACAQCHVGG
QTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLLEYHPNTQLTSEYPRLRNLTDEDLKLIAGYILVQAK
TVPGWGGTKNESHSDLSAYL
>Mature_180_residues
MFSKAFSFQKVFAPARRRLLVLLLAALMAGFGWGLAPVFAARDIPAVALSPTESITFTEAQLAKGKKLFNTACAQCHVGG
QTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDGVESLLEYHPNTQLTSEYPRLRNLTDEDLKLIAGYILVQAK
TVPGWGGTKNESHSDLSAYL

Specific function: Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PsbV subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CY550_SYNJB (Q2JIS8)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478733.1
- ProteinModelPortal:   Q2JIS8
- SMR:   Q2JIS8
- STRING:   Q2JIS8
- GeneID:   3902064
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_2537
- TIGR:   CYB_2537
- eggNOG:   NOG13404
- HOGENOM:   HBG285698
- OMA:   HVGGQTY
- ProtClustDB:   PRK13622
- BioCyc:   SSP321332:CYB_2537-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01378
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR016003
- InterPro:   IPR017851
- Gene3D:   G3DSA:1.10.760.10
- PIRSF:   PIRSF005890
- TIGRFAMs:   TIGR03045

Pfam domain/function: PF00034 Cytochrom_C; SSF46626 Cytochrome_c

EC number: NA

Molecular weight: Translated: 19629; Mature: 19629

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51007 CYTC

Important sites: BINDING 73-73 BINDING 76-76

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKAFSFQKVFAPARRRLLVLLLAALMAGFGWGLAPVFAARDIPAVALSPTESITFTEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCEEEHHH
QLAKGKKLFNTACAQCHVGGQTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEHHHHHHCCCCCHHH
VESLLEYHPNTQLTSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKNESHSDLSAYL
HHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MFSKAFSFQKVFAPARRRLLVLLLAALMAGFGWGLAPVFAARDIPAVALSPTESITFTEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCEEEHHH
QLAKGKKLFNTACAQCHVGGQTYPNPDVSLKLSDLEGATPPRDNVLAIVDYIKNPVTYDG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEHHHHHHCCCCCHHH
VESLLEYHPNTQLTSEYPRLRNLTDEDLKLIAGYILVQAKTVPGWGGTKNESHSDLSAYL
HHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA