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The map label for this gene is ydcM [C]

Identifier: 86609955

GI number: 86609955

Start: 2619922

End: 2621115

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2521

Alternate gene names: 86609955

Gene position: 2619922-2621115 (Clockwise)

Preceding gene: 86609954

Following gene: 86609956

Centisome position: 85.99

GC content: 57.96

Gene sequence:

>1194_bases
ATGACCCAAGTCCTGACCGTATCCTGCAAGCTCAAGGCGTCCCAGTCGCAAGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAATTGGGTCAACCAGAACACGCCGGAGAAAGTCGCCAACGCCGTTAAGCTCCAGTCTCTGTGCT
ACCGCGAAATCCGTGCCCGGTTCGGCTTATCCAGTAACTTGGCTCAGCAGGTCTGCAGACGGCTGGCCGGCGCCCGTAAA
GTTGCCCAACAGAAAAACCGCCCCGTCAAAGCGTTCAAAGGGGGCTTCGCTACCTACGACGCTCGTATCTTTTCGTTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACGGCTGGCTGGTTCCAACCCCAAATCTGCCACCCTGGTCAAGCGTAAAGACGGCTCCTACTCCATTCAAATCTGTGTG
GAAGCGGAGCCATCCCCGCCGCAACGCACGGGCAGAGTGCTGGGGGTGGACTTGGGGAGGACGGATATTGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACCGAGTCCGAGACCACTACTCCCGATTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGTTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAAGCTACCAACAGCGCTATCGCCCTGGAAGA
CCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCGCGCAGCAAAGCCGAGCGGCGCAGGGCCAACAGTTGGGCGTTCT
ACCAACTACGCCAGTTTCTGGAATACAAGGCGAGGGTTGCAGGGGTTTCTCTGATTCCTGTGCCGCCTGCTTACACGTCG
CAGACCTGTCACCGGTGCTTACACATCCACCCTGAGCAGGGCAAGTCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTCTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAACAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
GCTGATCGCCCATCTGTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACTGGATCCAGATGCGGCTGTGCTGGCGGAGCCAAGTCAATAGTCTTTATCTTGAGAGCG
CCTTTGGGGGAGGGCGGAGC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLIPVPPAYTS
QTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA

Sequences:

>Translated_397_residues
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLIPVPPAYTS
QTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
>Mature_396_residues
TQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARKV
AQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLIPVPPAYTSQ
TCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44576; Mature: 44445

Theoretical pI: Translated: 11.33; Mature: 11.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLIPVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLIPVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]