| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609937
Identifier: 86609937
GI number: 86609937
Start: 2598071
End: 2598733
Strand: Direct
Name: 86609937
Synonym: CYB_2503
Alternate gene names: NA
Gene position: 2598071-2598733 (Clockwise)
Preceding gene: 86609935
Following gene: 86609938
Centisome position: 85.28
GC content: 63.5
Gene sequence:
>663_bases ATGAGCCACTACGGAGGCCGTATTGCACAGCTCAGCTCCGTTAGGTTGGGAGGACGGCGTTCCCGCCCGCGTCGGGGCCG GGCCCTACAACTGGGGATCCTCGGCTTTTTGCTGGGGCTGGGGGCGATGGGGGCAGCCTGGTGGTACACCATTGGGCCGC GGCAGACGCTTTCCTTGTATTGGCTGACCAGTGCCGACAACTCCATTTACTATGTGCAGCAAGAGCGCACGGTTCGCGCC TTCGACGCTCAGGAAGCCATCCGCCTGGCTCTGGAGGAGCTGATTGCCGGCCCCAGGGATCCCCACCTTACCAGCGCCAT TCCACCCCAGACGCGGGTGTTGGATGTGCGGGTGGAAGGTGACGATATTTTTCTCAATTTTTCCCCAGAGTTTACCCAGG GGGGGGGAGCCACGGCAATGATGAGCCGGGTCACGCAGGTGCTCTACACCGCCACCAGCCAAAACCCCGGCGCCCGGGTT TGGATCTCGGTGGAAGGCCGTGCCCTAGAAGTGCTGGGGGGAGAGGGGCTGATCCTGGATCAACCCCTGACACGGGCCTC GTTTGTGCCCAGCTTTCAGCTGCCAGCGGAGCCGGCAACCCCGAAGGACTCCGCCCCCCTAACGGGGTCGCCAAAGCGTC GCCTAGCGATAACGGCTTCTTGA
Upstream 100 bases:
>100_bases TTGCTGCCGCACTTTTGCCTGTCCAGCCTATGGGGGATCCCCGGCAGAGTGGGCTTTTCTTCGCTACCCTAGAGCTAGGT AAGACAGGGGGTTGCCAGCG
Downstream 100 bases:
>100_bases GACGGAAACCATGAGCTGGTTGCAGCGGGTGGGCAGCAGTTTTCTCCTGGCCGGCCAGGTGATTTTGCATCTGATGCGGG GTCGTATCCATCGCCGCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MSHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLYWLTSADNSIYYVQQERTVRA FDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEGDDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARV WISVEGRALEVLGGEGLILDQPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS
Sequences:
>Translated_220_residues MSHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLYWLTSADNSIYYVQQERTVRA FDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEGDDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARV WISVEGRALEVLGGEGLILDQPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS >Mature_219_residues SHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLYWLTSADNSIYYVQQERTVRAF DAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEGDDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARVW ISVEGRALEVLGGEGLILDQPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS
Specific function: Unknown
COG id: COG5401
COG function: function code R; Spore germination protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23920; Mature: 23788
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLY CCCCCCCEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCEEEEE WLTSADNSIYYVQQERTVRAFDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEG EEECCCCEEEEEECCCEEEHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC DDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARVWISVEGRALEVLGGEGLILD CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEECCCCEEEC QPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure SHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLY CCCCCCEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCEEEEE WLTSADNSIYYVQQERTVRAFDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEG EEECCCCEEEEEECCCEEEHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC DDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARVWISVEGRALEVLGGEGLILD CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEECCCCEEEC QPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA