Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609937

Identifier: 86609937

GI number: 86609937

Start: 2598071

End: 2598733

Strand: Direct

Name: 86609937

Synonym: CYB_2503

Alternate gene names: NA

Gene position: 2598071-2598733 (Clockwise)

Preceding gene: 86609935

Following gene: 86609938

Centisome position: 85.28

GC content: 63.5

Gene sequence:

>663_bases
ATGAGCCACTACGGAGGCCGTATTGCACAGCTCAGCTCCGTTAGGTTGGGAGGACGGCGTTCCCGCCCGCGTCGGGGCCG
GGCCCTACAACTGGGGATCCTCGGCTTTTTGCTGGGGCTGGGGGCGATGGGGGCAGCCTGGTGGTACACCATTGGGCCGC
GGCAGACGCTTTCCTTGTATTGGCTGACCAGTGCCGACAACTCCATTTACTATGTGCAGCAAGAGCGCACGGTTCGCGCC
TTCGACGCTCAGGAAGCCATCCGCCTGGCTCTGGAGGAGCTGATTGCCGGCCCCAGGGATCCCCACCTTACCAGCGCCAT
TCCACCCCAGACGCGGGTGTTGGATGTGCGGGTGGAAGGTGACGATATTTTTCTCAATTTTTCCCCAGAGTTTACCCAGG
GGGGGGGAGCCACGGCAATGATGAGCCGGGTCACGCAGGTGCTCTACACCGCCACCAGCCAAAACCCCGGCGCCCGGGTT
TGGATCTCGGTGGAAGGCCGTGCCCTAGAAGTGCTGGGGGGAGAGGGGCTGATCCTGGATCAACCCCTGACACGGGCCTC
GTTTGTGCCCAGCTTTCAGCTGCCAGCGGAGCCGGCAACCCCGAAGGACTCCGCCCCCCTAACGGGGTCGCCAAAGCGTC
GCCTAGCGATAACGGCTTCTTGA

Upstream 100 bases:

>100_bases
TTGCTGCCGCACTTTTGCCTGTCCAGCCTATGGGGGATCCCCGGCAGAGTGGGCTTTTCTTCGCTACCCTAGAGCTAGGT
AAGACAGGGGGTTGCCAGCG

Downstream 100 bases:

>100_bases
GACGGAAACCATGAGCTGGTTGCAGCGGGTGGGCAGCAGTTTTCTCCTGGCCGGCCAGGTGATTTTGCATCTGATGCGGG
GTCGTATCCATCGCCGCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLYWLTSADNSIYYVQQERTVRA
FDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEGDDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARV
WISVEGRALEVLGGEGLILDQPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS

Sequences:

>Translated_220_residues
MSHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLYWLTSADNSIYYVQQERTVRA
FDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEGDDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARV
WISVEGRALEVLGGEGLILDQPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS
>Mature_219_residues
SHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLYWLTSADNSIYYVQQERTVRAF
DAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEGDDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARVW
ISVEGRALEVLGGEGLILDQPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS

Specific function: Unknown

COG id: COG5401

COG function: function code R; Spore germination protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23920; Mature: 23788

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLY
CCCCCCCEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCEEEEE
WLTSADNSIYYVQQERTVRAFDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEG
EEECCCCEEEEEECCCEEEHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
DDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARVWISVEGRALEVLGGEGLILD
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEECCCCEEEC
QPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure 
SHYGGRIAQLSSVRLGGRRSRPRRGRALQLGILGFLLGLGAMGAAWWYTIGPRQTLSLY
CCCCCCEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCEEEEE
WLTSADNSIYYVQQERTVRAFDAQEAIRLALEELIAGPRDPHLTSAIPPQTRVLDVRVEG
EEECCCCEEEEEECCCEEEHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
DDIFLNFSPEFTQGGGATAMMSRVTQVLYTATSQNPGARVWISVEGRALEVLGGEGLILD
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEECCCCEEEC
QPLTRASFVPSFQLPAEPATPKDSAPLTGSPKRRLAITAS
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA