| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609869
Identifier: 86609869
GI number: 86609869
Start: 2530394
End: 2530924
Strand: Direct
Name: 86609869
Synonym: CYB_2434
Alternate gene names: NA
Gene position: 2530394-2530924 (Clockwise)
Preceding gene: 86609865
Following gene: 86609871
Centisome position: 83.05
GC content: 60.64
Gene sequence:
>531_bases ATGTCTGTTGCTTGGCTGGCTTCGGTTCTGGCGAGGCGGTCTTGGCTGAGCCGTTTCCTGCGGGGGATGGTGCTTTGCGG GCTGATACTCTGCCTGGGGGTTACTCCGCTGGGATCCCCGGCCCACGCCGAAGACTACACCAAACGAGATCTACAGGGGG TGAGCTTTGCAGGGCAAGACCTGAGCGGCTGGAAGTTTCTCAAGGCCAACCTGCGCCAAAGCGATCTCAGCCATGTGAAG GCGGCAGGGGCGAACCTGTTCGGGGCCAATCTCAGCAAAGCCAACTTGCGCGGAGCCGACTTGCGCGGGGCCACTTTGGA CATGGCCAACCTACAGGGTGCGGATCTGCGAGAAGCGCAACTGCAGGACAGCATGATGTGGCTGGCCCGAGTCGAAGGGA TCCAAATTGATGGGGCGGATTTCACCAATGCGTTGATACGGCAAGACGCCCTCTCCATCCTTTGCGAACGGGCCACCGGC GTTAACCCTGTAACCGGTCGGGCCACCCGCGACACTCTTGAATGTGACTGA
Upstream 100 bases:
>100_bases CTTTAAGATAGCCCAACCTGCCGGCGGGATCCCTATCCGGTAAGATAAAACCAGAAGCAATTCCCAAGCCATGGAGGTTT CCTTGAGGGAGGGATCCACG
Downstream 100 bases:
>100_bases TCCTCACCCCCGGCTCTTCTCCCAGAGGGAGAGGGGAGATAGGCAGCAGAACCCATCGCCTCACTGCCCTCTGGAATCCG GATTTTAGGAGCTGGGAGCG
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: Pentapeptide Repeat Protein; RfrA Pentapeptide Repeat-Containing Protein; Secreted Pentapeptide Repeats Protein; Pentapeptide Repeat Family Protein
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSVAWLASVLARRSWLSRFLRGMVLCGLILCLGVTPLGSPAHAEDYTKRDLQGVSFAGQDLSGWKFLKANLRQSDLSHVK AAGANLFGANLSKANLRGADLRGATLDMANLQGADLREAQLQDSMMWLARVEGIQIDGADFTNALIRQDALSILCERATG VNPVTGRATRDTLECD
Sequences:
>Translated_176_residues MSVAWLASVLARRSWLSRFLRGMVLCGLILCLGVTPLGSPAHAEDYTKRDLQGVSFAGQDLSGWKFLKANLRQSDLSHVK AAGANLFGANLSKANLRGADLRGATLDMANLQGADLREAQLQDSMMWLARVEGIQIDGADFTNALIRQDALSILCERATG VNPVTGRATRDTLECD >Mature_175_residues SVAWLASVLARRSWLSRFLRGMVLCGLILCLGVTPLGSPAHAEDYTKRDLQGVSFAGQDLSGWKFLKANLRQSDLSHVKA AGANLFGANLSKANLRGADLRGATLDMANLQGADLREAQLQDSMMWLARVEGIQIDGADFTNALIRQDALSILCERATGV NPVTGRATRDTLECD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19004; Mature: 18873
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAWLASVLARRSWLSRFLRGMVLCGLILCLGVTPLGSPAHAEDYTKRDLQGVSFAGQD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCC LSGWKFLKANLRQSDLSHVKAAGANLFGANLSKANLRGADLRGATLDMANLQGADLREAQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH LQDSMMWLARVEGIQIDGADFTNALIRQDALSILCERATGVNPVTGRATRDTLECD HHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SVAWLASVLARRSWLSRFLRGMVLCGLILCLGVTPLGSPAHAEDYTKRDLQGVSFAGQD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCC LSGWKFLKANLRQSDLSHVKAAGANLFGANLSKANLRGADLRGATLDMANLQGADLREAQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH LQDSMMWLARVEGIQIDGADFTNALIRQDALSILCERATGVNPVTGRATRDTLECD HHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA