BacMap

Definition	Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession	NC_007776
Length	3,046,682

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The map label for this gene is yahD [C]

Identifier: 86609854

GI number: 86609854

Start: 2515695

End: 2516261

Strand: Direct

Name: yahD [C]

Synonym: CYB_2419

Alternate gene names: 86609854

Gene position: 2515695-2516261 (Clockwise)

Preceding gene: 86609853

Following gene: 86609856

Centisome position: 82.57

GC content: 63.32

Gene sequence:

>567_bases
ATGCGAGGTCAGGTCCTAAAAATCGCTGTCGGACTGGGATCCCTGCTAGTGGGGGGTCTGGGATTCTATGGATACTCCCT
ACCAGAAGATCCACAAGCCTTGGCCCAAGCCAACCCGCTGCGGCTGCAACTGGCTCTCTGGCTGGGGAAAGACGCCAACG
CTGTCGATGAGCGGGGCAAGACAGCCCTGTTTTTCGTGGAGAGCGGCCTCAACGCTCGTCTTTTGCTGGCAGCGGGGGCG
GATCCCAATCAACTAGACCATGGGGGAGCTAGCCCACTGCACCAAGCGGCTCGCCTGGGCAACCCTGAGGTTACGAAAGC
CCTGCTCCAGGGAGGGGCCGAGGTGAACGCTCGTTTTGGCGCCGGTGGCCTTCCCCTGCATTTTGCCGCTTGGTCCGGCA
ACCCCGAGGTCGTTCGGCTGCTGCTGGAACATGGCTCCGAGATCGACGAGCCGGACGGCTACGGCCTCACGCCCCTGCGC
ATTGCCCAGGATCTGCGCCGCTGGGAAGCTGCAACCCTGTTGTCCCGCTGGCCCCGCTCCGCCTCAACCGACGGGCATAC
AGATTGA

Upstream 100 bases:

>100_bases
GCTGCTGCCCCGCAACCTGCCCTCAGCAACCCGTTGCTGCTCTCGGCCCAGGCTCTGCCCAGGCAGGGGCTCGCCATCCT
TTTCTTTGAGGAATAGGGCT

Downstream 100 bases:

>100_bases
TTCCCCTTCTCTACCACCCCAGCACCGAGGCGAAGATCAAAGGCGCCACGATGGTGGCATCCGACTCGATGACAAATTTG
GGGGTGTCGATCCCCAATTT

Product: ankyrin repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRGQVLKIAVGLGSLLVGGLGFYGYSLPEDPQALAQANPLRLQLALWLGKDANAVDERGKTALFFVESGLNARLLLAAGA
DPNQLDHGGASPLHQAARLGNPEVTKALLQGGAEVNARFGAGGLPLHFAAWSGNPEVVRLLLEHGSEIDEPDGYGLTPLR
IAQDLRRWEAATLLSRWPRSASTDGHTD

Sequences:

>Translated_188_residues
MRGQVLKIAVGLGSLLVGGLGFYGYSLPEDPQALAQANPLRLQLALWLGKDANAVDERGKTALFFVESGLNARLLLAAGA
DPNQLDHGGASPLHQAARLGNPEVTKALLQGGAEVNARFGAGGLPLHFAAWSGNPEVVRLLLEHGSEIDEPDGYGLTPLR
IAQDLRRWEAATLLSRWPRSASTDGHTD
>Mature_188_residues
MRGQVLKIAVGLGSLLVGGLGFYGYSLPEDPQALAQANPLRLQLALWLGKDANAVDERGKTALFFVESGLNARLLLAAGA
DPNQLDHGGASPLHQAARLGNPEVTKALLQGGAEVNARFGAGGLPLHFAAWSGNPEVVRLLLEHGSEIDEPDGYGLTPLR
IAQDLRRWEAATLLSRWPRSASTDGHTD

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 8 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI68131557, Length=139, Percent_Identity=38.8489208633094, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI32967601, Length=140, Percent_Identity=35.7142857142857, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI13129098, Length=120, Percent_Identity=40, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI70780355, Length=152, Percent_Identity=37.5, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI70780359, Length=152, Percent_Identity=37.5, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI70780357, Length=152, Percent_Identity=37.5, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI215598574, Length=152, Percent_Identity=37.5, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI70780353, Length=152, Percent_Identity=37.5, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI304361760, Length=90, Percent_Identity=43.3333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI304361757, Length=90, Percent_Identity=43.3333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI157743284, Length=113, Percent_Identity=45.1327433628319, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4502753, Length=112, Percent_Identity=41.9642857142857, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI17981702, Length=112, Percent_Identity=41.9642857142857, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI52426735, Length=136, Percent_Identity=36.0294117647059, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI24233530, Length=115, Percent_Identity=42.6086956521739, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI52426737, Length=136, Percent_Identity=36.0294117647059, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI188595682, Length=136, Percent_Identity=36.0294117647059, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI7705748, Length=107, Percent_Identity=40.1869158878505, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI8051597, Length=106, Percent_Identity=36.7924528301887, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI32483404, Length=106, Percent_Identity=36.7924528301887, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI8051599, Length=106, Percent_Identity=36.7924528301887, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI8051595, Length=105, Percent_Identity=37.1428571428571, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI8051593, Length=105, Percent_Identity=37.1428571428571, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI163914396, Length=107, Percent_Identity=40.1869158878505, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI56676397, Length=113, Percent_Identity=39.8230088495575, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI157266328, Length=90, Percent_Identity=40, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI41327754, Length=137, Percent_Identity=32.8467153284672, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI134948605, Length=113, Percent_Identity=34.5132743362832, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI134948558, Length=113, Percent_Identity=34.5132743362832, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI28605137, Length=114, Percent_Identity=39.4736842105263, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI30425444, Length=93, Percent_Identity=38.7096774193548, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4506217, Length=114, Percent_Identity=39.4736842105263, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI20270347, Length=104, Percent_Identity=44.2307692307692, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI7705831, Length=104, Percent_Identity=36.5384615384615, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI22208951, Length=104, Percent_Identity=36.5384615384615, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI156142184, Length=102, Percent_Identity=36.2745098039216, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI255982572, Length=104, Percent_Identity=36.5384615384615, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI62988328, Length=120, Percent_Identity=34.1666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI268607595, Length=120, Percent_Identity=34.1666666666667, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI87239981, Length=152, Percent_Identity=35.5263157894737, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI13376842, Length=101, Percent_Identity=39.6039603960396, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI217416347, Length=147, Percent_Identity=35.3741496598639, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI18252778, Length=103, Percent_Identity=32.0388349514563, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI116875852, Length=89, Percent_Identity=39.3258426966292, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71981411, Length=117, Percent_Identity=39.3162393162393, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71981414, Length=151, Percent_Identity=34.4370860927152, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI25145251, Length=151, Percent_Identity=34.4370860927152, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71981389, Length=151, Percent_Identity=34.4370860927152, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17542700, Length=151, Percent_Identity=34.4370860927152, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI161082089, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082099, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082085, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082106, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082081, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082096, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082110, Length=137, Percent_Identity=35.036496350365, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281359521, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281359519, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28558752, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28558750, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28558756, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28558754, Length=108, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161082092, Length=103, Percent_Identity=39.8058252427184, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24583835, Length=153, Percent_Identity=35.9477124183007, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 19916; Mature: 19916

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGQVLKIAVGLGSLLVGGLGFYGYSLPEDPQALAQANPLRLQLALWLGKDANAVDERGK
CCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEEEECCCCCHHHHCCC
TALFFVESGLNARLLLAAGADPNQLDHGGASPLHQAARLGNPEVTKALLQGGAEVNARFG
EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEEC
AGGLPLHFAAWSGNPEVVRLLLEHGSEIDEPDGYGLTPLRIAQDLRRWEAATLLSRWPRS
CCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
ASTDGHTD
CCCCCCCC
>Mature Secondary Structure
MRGQVLKIAVGLGSLLVGGLGFYGYSLPEDPQALAQANPLRLQLALWLGKDANAVDERGK
CCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEEEECCCCCHHHHCCC
TALFFVESGLNARLLLAAGADPNQLDHGGASPLHQAARLGNPEVTKALLQGGAEVNARFG
EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEEC
AGGLPLHFAAWSGNPEVVRLLLEHGSEIDEPDGYGLTPLRIAQDLRRWEAATLLSRWPRS
CCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
ASTDGHTD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792869 [H]