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The map label for this gene is ydcM [C]

Identifier: 86609846

GI number: 86609846

Start: 2506709

End: 2507857

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2410

Alternate gene names: 86609846

Gene position: 2506709-2507857 (Clockwise)

Preceding gene: 90296804

Following gene: 86609847

Centisome position: 82.28

GC content: 54.92

Gene sequence:

>1149_bases
ATGACCCAAGTCCTGACCGTTTCTTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCCAAATTGGACGAGACATTGGATGC
TTTGTCGCTACGCGACGCTAACGCGAACGGCCAAGCCTTGAACTGGGTCAACCAAAACACACCCGAGAAAGTCGTCAACC
CACTGAAACTCCAATCCCTGTGCTACTACGAAATCCGTGCCCGTTTCGGCTTGTCCAGTAATTTGGCAAGGACTACGTCC
CGCTTACGCGACCAACAGATATGCAGACGGGTAGCGTCTGCTCGCAAGGTGGCACAACAGAAAAACCGCCCGGTCAAAGC
GTTGTCGCTACGCGACGCTAACGCGAACAAGGGTGGCTTCGCTACCTACGACGCTCGTATCTTTTCGTTTCGCGAGAAAG
ACTGGACGGTGTCGCTCACCACGGTGGAGGGTCGAGAACGCTTTGAGCTGGCGATTGGTCATTACCAGAGAGAACAGTTG
GCAGGCTCCAATCCCAAAAAGACCTCCGGTCCGCTGACGCGAACGGCCACTCTGGTCAAGCGCAAAGACGGTTCCTACTC
CATCCAGATTTGCGTGGAAGCAAAGTTACCGGAACAGCAGAACACCGCTCAGGTGGTAGGCGTGGACTTGGGAAGGACAG
ATATTGCCCATACGTCAGAGGGGGACAACTGGAATGGACAGCAGTTGAACAGAGTCCGAGACCACTACTCCCGGTTGAGG
GCGGTACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGG
TAAGGAGAGACGCTTTCAGTCGCGTCAGCGTTGCGTAGCAAAAACGTGGGTCAATCATCGCATCTCTAAAGCTATTGTTT
CTAGGGCAAAGGCCACAAATAGCGCTATTGCTTTAGAGGACTTGACAGGGATACGGGAGCGTATCAACCAACAACCCCGC
AGCAAAGCCGAGCGGCGCAGGGCCAACAGTTGGGCGTTCTACCAACTGAGGCAGTTTCTGGAATACAAGGCGAGAGTTGC
AGGGGTTTCTCTAATCCTTGTTCCGCCTGCTTATACCTCGCAGACCTGTCACAAGTGTTTGCACATCCATCCCGACCCTG
CGCAATCCTGTCGCGTCAGCGTTGCGTAG

Upstream 100 bases:

>100_bases
TTAACTGCCTGGCTAGCCCGTCAGCTAGAAACCGCAGGAGCCCCGCTCTCTGCCCACAGGGCAAGGGTCGGGAGGAATGT
GAGTAAAATGCAATAAGGCT

Downstream 100 bases:

>100_bases
CAAAATCGCAGTGGGAAGCAGTTTAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGACTGGAATGGGGCCAACATGAT
TGCCAAACTTGGGGCTGCTG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTQVLTVSCKLKVSQSQAAKLDETLDALSLRDANANGQALNWVNQNTPEKVVNPLKLQSLCYYEIRARFGLSSNLARTTS
RLRDQQICRRVASARKVAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGHYQREQL
AGSNPKKTSGPLTRTATLVKRKDGSYSIQICVEAKLPEQQNTAQVVGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLR
AVLQRKASKGTRSSRRRCRELLQRLSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERINQQPR
SKAERRRANSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSCRVSVA

Sequences:

>Translated_382_residues
MTQVLTVSCKLKVSQSQAAKLDETLDALSLRDANANGQALNWVNQNTPEKVVNPLKLQSLCYYEIRARFGLSSNLARTTS
RLRDQQICRRVASARKVAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGHYQREQL
AGSNPKKTSGPLTRTATLVKRKDGSYSIQICVEAKLPEQQNTAQVVGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLR
AVLQRKASKGTRSSRRRCRELLQRLSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERINQQPR
SKAERRRANSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSCRVSVA
>Mature_381_residues
TQVLTVSCKLKVSQSQAAKLDETLDALSLRDANANGQALNWVNQNTPEKVVNPLKLQSLCYYEIRARFGLSSNLARTTSR
LRDQQICRRVASARKVAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGHYQREQLA
GSNPKKTSGPLTRTATLVKRKDGSYSIQICVEAKLPEQQNTAQVVGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRA
VLQRKASKGTRSSRRRCRELLQRLSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERINQQPRS
KAERRRANSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQTCHKCLHIHPDPAQSCRVSVA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43255; Mature: 43124

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDETLDALSLRDANANGQALNWVNQNTPEKVVNPLKLQSL
CCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCHHHHHHH
CYYEIRARFGLSSNLARTTSRLRDQQICRRVASARKVAQQKNRPVKALSLRDANANKGGF
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCE
ATYDARIFSFREKDWTVSLTTVEGRERFELAIGHYQREQLAGSNPKKTSGPLTRTATLVK
EEEHHHEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHE
RKDGSYSIQICVEAKLPEQQNTAQVVGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLR
ECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AVLQRKASKGTRSSRRRCRELLQRLSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATN
HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SAIALEDLTGIRERINQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLILVPPAYTS
CEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCH
QTCHKCLHIHPDPAQSCRVSVA
HHHHHHHCCCCCCHHCCEEECC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDETLDALSLRDANANGQALNWVNQNTPEKVVNPLKLQSL
CCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCHHHHHHH
CYYEIRARFGLSSNLARTTSRLRDQQICRRVASARKVAQQKNRPVKALSLRDANANKGGF
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCE
ATYDARIFSFREKDWTVSLTTVEGRERFELAIGHYQREQLAGSNPKKTSGPLTRTATLVK
EEEHHHEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHE
RKDGSYSIQICVEAKLPEQQNTAQVVGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLR
ECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AVLQRKASKGTRSSRRRCRELLQRLSGKERRFQSRQRCVAKTWVNHRISKAIVSRAKATN
HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SAIALEDLTGIRERINQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLILVPPAYTS
CEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCH
QTCHKCLHIHPDPAQSCRVSVA
HHHHHHHCCCCCCHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]