| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86609712
Identifier: 86609712
GI number: 86609712
Start: 2376131
End: 2377504
Strand: Direct
Name: 86609712
Synonym: CYB_2271
Alternate gene names: NA
Gene position: 2376131-2377504 (Clockwise)
Preceding gene: 86609711
Following gene: 86609714
Centisome position: 77.99
GC content: 60.33
Gene sequence:
>1374_bases ATGCGTCGTCTTCTCCAGATTTTCATGCTGGGATTGGCCTCTCTTTGGGCGGCGAGCTTTCTGGCTTTCCCCGCTGCCCC AGAGGGATCCCAGCCATTGCCCCCTCGAGCGGGTGGCGAAACAACCCTTTGGAACCGCACCTCAACAGCCTACGAGCAGC CGGCTCCCAACTTGGATCCCCGCTGGGCCAGGTTGCATGCCCTGGGGGACATCGCCTTTGAGGCTCGCTTCGTCACCGCT CCGGCGCCTGTTAACCCCGGCCTTGGGCCTCTGTTCAACAACAACTCCTGCGCCGGTTGTCATGTTAAAAACGGCCGAGG TTTTCCTGACAAGGGGCAGCGGGTCGTCAGAGTCAGCCAGGTTGGATCCCTGGATAGAAGCGGGGATCCCCAGCCTTTTG GATGGGAGGCCATTGCTCCTCATAGCAACACTCCCCCTGTGGCCGGCATCGGCACGCAGGTTCAAGAAAAGGCCGTTCGG GGCTATCGGCCAGAGGCCAAGGTGGAGTTGCACTGGGTAGAGCAGACCAGAGAGTACGCCGACGGAACTCCCTACAGGCT GCGTTCTCCTGTTGTAAAGCTGTTAACTCTGGAGGGATCGCCCATCGATCCTGTCCTCATCTCCCTGCGGATCCCCCAGC CGGTGTTTGGAGCGGGCCTACTGGAGGCCGTTCCCGCTTCTAGGATCCTGGCAGCAGCCGATCCTGACGACGCCGATGGG GATGGCATCTCTGGCCGCCCCAACTTGGTTTGGGATCAAGAGCAGCAGCGTCTGGTGCTGGGACGGTTTGGTTGGAAAGC CAATACCCCCAACCTCAGGCAACAAACTGCGGCCGCCTACGCCAACGACATGGGTGTCACGAATCCTCTTTTTCCGGCCG CGGATGGCAGCCAAGATATCGACGAGGCCACTCTCCAAGCGACAACCGTTTACGTGCAAACCCTGGCCGTGCCTGGCCGC GCCCTTTGGCAGGATCCCCAAGTTCAGCGAGGGGAAAAGCTCTTCGTCCAAGCCCAATGCGCCAAGTGTCACCGACCAGA GCTACAAACCGGCATTCATGAGATCCCTGCCCTGGCCAACCAAGTCATCCACCCCTACACCGATTTGCTGTTGCATGACA TGGGCGAAGGACTAGCAGATGGCCGCGCTGACTTCGAGGCCACGGGCCGAGAATGGCGCACCCCCCCTTTGTGGGGCATC GGCTTGTCGCAGACAGTTCTGCCCTCCTCCGGCTATTTGCACGATGGCCGCGCCCGCAGCCTCGAGGAGGCCATTCTCTG GCATGGGGGAGAAGCTGAACGCTCCCGCGAGATCTTTAAAAATATGGCTGCTGAAGACAGAGAAGCCCTGCTCTATTTTC TTCGATCCCTCTAG
Upstream 100 bases:
>100_bases AATTGAAGACGCTTTCGACAGCTTTGCTCAGGAAGTTGTGCCGCTCCTGCAGTAGTAAGAAAGTCCCAAAAGAGCTGAGT TGCCGATATTTTGATAGCCG
Downstream 100 bases:
>100_bases AGCTCTGCCCATTTCCGCAGCAGGTTCGCGTAAACTTTGGAGATCAAATCAAAGTGGCGTGTCTTGCCCGATTCCTGAAA CATCTGCTGCCGCACAGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Thiol Oxidoreductase-Like Protein; Exported Protein; Signal Peptide
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MRRLLQIFMLGLASLWAASFLAFPAAPEGSQPLPPRAGGETTLWNRTSTAYEQPAPNLDPRWARLHALGDIAFEARFVTA PAPVNPGLGPLFNNNSCAGCHVKNGRGFPDKGQRVVRVSQVGSLDRSGDPQPFGWEAIAPHSNTPPVAGIGTQVQEKAVR GYRPEAKVELHWVEQTREYADGTPYRLRSPVVKLLTLEGSPIDPVLISLRIPQPVFGAGLLEAVPASRILAAADPDDADG DGISGRPNLVWDQEQQRLVLGRFGWKANTPNLRQQTAAAYANDMGVTNPLFPAADGSQDIDEATLQATTVYVQTLAVPGR ALWQDPQVQRGEKLFVQAQCAKCHRPELQTGIHEIPALANQVIHPYTDLLLHDMGEGLADGRADFEATGREWRTPPLWGI GLSQTVLPSSGYLHDGRARSLEEAILWHGGEAERSREIFKNMAAEDREALLYFLRSL
Sequences:
>Translated_457_residues MRRLLQIFMLGLASLWAASFLAFPAAPEGSQPLPPRAGGETTLWNRTSTAYEQPAPNLDPRWARLHALGDIAFEARFVTA PAPVNPGLGPLFNNNSCAGCHVKNGRGFPDKGQRVVRVSQVGSLDRSGDPQPFGWEAIAPHSNTPPVAGIGTQVQEKAVR GYRPEAKVELHWVEQTREYADGTPYRLRSPVVKLLTLEGSPIDPVLISLRIPQPVFGAGLLEAVPASRILAAADPDDADG DGISGRPNLVWDQEQQRLVLGRFGWKANTPNLRQQTAAAYANDMGVTNPLFPAADGSQDIDEATLQATTVYVQTLAVPGR ALWQDPQVQRGEKLFVQAQCAKCHRPELQTGIHEIPALANQVIHPYTDLLLHDMGEGLADGRADFEATGREWRTPPLWGI GLSQTVLPSSGYLHDGRARSLEEAILWHGGEAERSREIFKNMAAEDREALLYFLRSL >Mature_457_residues MRRLLQIFMLGLASLWAASFLAFPAAPEGSQPLPPRAGGETTLWNRTSTAYEQPAPNLDPRWARLHALGDIAFEARFVTA PAPVNPGLGPLFNNNSCAGCHVKNGRGFPDKGQRVVRVSQVGSLDRSGDPQPFGWEAIAPHSNTPPVAGIGTQVQEKAVR GYRPEAKVELHWVEQTREYADGTPYRLRSPVVKLLTLEGSPIDPVLISLRIPQPVFGAGLLEAVPASRILAAADPDDADG DGISGRPNLVWDQEQQRLVLGRFGWKANTPNLRQQTAAAYANDMGVTNPLFPAADGSQDIDEATLQATTVYVQTLAVPGR ALWQDPQVQRGEKLFVQAQCAKCHRPELQTGIHEIPALANQVIHPYTDLLLHDMGEGLADGRADFEATGREWRTPPLWGI GLSQTVLPSSGYLHDGRARSLEEAILWHGGEAERSREIFKNMAAEDREALLYFLRSL
Specific function: Unknown
COG id: COG3488
COG function: function code C; Predicted thiol oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49917; Mature: 49917
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLLQIFMLGLASLWAASFLAFPAAPEGSQPLPPRAGGETTLWNRTSTAYEQPAPNLDP CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCH RWARLHALGDIAFEARFVTAPAPVNPGLGPLFNNNSCAGCHVKNGRGFPDKGQRVVRVSQ HHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEHH VGSLDRSGDPQPFGWEAIAPHSNTPPVAGIGTQVQEKAVRGYRPEAKVELHWVEQTREYA HCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHC DGTPYRLRSPVVKLLTLEGSPIDPVLISLRIPQPVFGAGLLEAVPASRILAAADPDDADG CCCCHHHHCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCHHHEEEECCCCCCCC DGISGRPNLVWDQEQQRLVLGRFGWKANTPNLRQQTAAAYANDMGVTNPLFPAADGSQDI CCCCCCCCCEECCCHHEEEEHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH DEATLQATTVYVQTLAVPGRALWQDPQVQRGEKLFVQAQCAKCHRPELQTGIHEIPALAN HHHHHHHHHEEEHHHHCCCHHHCCCCCHHCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHH QVIHPYTDLLLHDMGEGLADGRADFEATGREWRTPPLWGIGLSQTVLPSSGYLHDGRARS HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH LEEAILWHGGEAERSREIFKNMAAEDREALLYFLRSL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MRRLLQIFMLGLASLWAASFLAFPAAPEGSQPLPPRAGGETTLWNRTSTAYEQPAPNLDP CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCH RWARLHALGDIAFEARFVTAPAPVNPGLGPLFNNNSCAGCHVKNGRGFPDKGQRVVRVSQ HHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEHH VGSLDRSGDPQPFGWEAIAPHSNTPPVAGIGTQVQEKAVRGYRPEAKVELHWVEQTREYA HCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHC DGTPYRLRSPVVKLLTLEGSPIDPVLISLRIPQPVFGAGLLEAVPASRILAAADPDDADG CCCCHHHHCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCHHHEEEECCCCCCCC DGISGRPNLVWDQEQQRLVLGRFGWKANTPNLRQQTAAAYANDMGVTNPLFPAADGSQDI CCCCCCCCCEECCCHHEEEEHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH DEATLQATTVYVQTLAVPGRALWQDPQVQRGEKLFVQAQCAKCHRPELQTGIHEIPALAN HHHHHHHHHEEEHHHHCCCHHHCCCCCHHCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHH QVIHPYTDLLLHDMGEGLADGRADFEATGREWRTPPLWGIGLSQTVLPSSGYLHDGRARS HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH LEEAILWHGGEAERSREIFKNMAAEDREALLYFLRSL HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA