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The map label for this gene is irpA [H]

Identifier: 86609711

GI number: 86609711

Start: 2374853

End: 2376085

Strand: Direct

Name: irpA [H]

Synonym: CYB_2269

Alternate gene names: 86609711

Gene position: 2374853-2376085 (Clockwise)

Preceding gene: 86609702

Following gene: 86609712

Centisome position: 77.95

GC content: 57.58

Gene sequence:

>1233_bases
ATGTCGAGGTATCTGAAGCTGTGGACGGGGATAGGGCTTTATGTTCTGGTCAGCGGGGCCGCTTGCGGGGAAACCCAAAA
GGATCCCTCGGCTGCGGGCGGCGGGGATCCACCGGCCCTGAGCCAGGCTTCGCCTCAGCAGGCAGCTCAAATGAACCCGG
AGTGTCGGCCTATCCCGGTGGATGGCGGCGGCGAGGGTGGGGAAGAAGGGGCAGGCTCTCGCCGGCCAGCCGTTGTGCTC
TCTCCTGAGCAGCGGTTTCAGGATCGGCAGATTTTGCTCGACTTTGCCGATCAGGTGGTGATCCCTGCCTATGAGCAGTT
GGTCGCCGATACCCAGGCCCTGTCTCAGGCCATCCAGGCCTTCGTGCAAGATCCCAATGCCCAGACTTTGCAAGCGGCTC
GCCAGGCTTGGTCTGTTGCCCGCATCACTTGGGAGGAGAGCGAGGCTTTTGCCTTTGGGCCGGCGGCTTATTTGGGGCTG
GATGCGGATTTGGACGAATGGCCCCTGAACGAGGTGGAGGTGCTGGAAGTTCTCAACAGCGGCGATCCCCTCACTCCAGA
GACCGTGGCCGAGTTGGAAAGCGGGCAAAAGGGATTTCATGCCGTGGCCTTCTTGCTCTTTGGCGTGGATAACAACAAGT
CTTTGCAAGACTTTACCGAGCGGGATCGGGAGTACTTGGCTGCCCTTGGCCCAGTTTTGGCGGATACGGCGGCAAAGCTG
CTCAAAAGCTGGACAGAGGGAGTGCAAGGGCTGCCTGCTTTTCGCGAAGAATGGGTAAAAGCCGGCGAGGGCAGCAAGAG
TTATCTCACGCTGCAAGCTGCTGCTGAAGAAATAGCCCAAGGTATTCTCGGCATGTTGGACGAGCTGGGCAAGGTCAAAA
TTGGCGAAGCCTTCGCCCAGCAAAATCCTTTTCTGCTGGAAAGTCGCTTTGCCCACCATTCGCTGCCGGAGTTCCAGGCC
AATGTGCGCAGCGTTCAGTATGCTTACTTGGGCGGATTTAGAGATAGAAAAGGTCGTGGCCTGAGCCAATTTGTCCGGGA
CATCAATCCCAATTTGGATAGTCAAATTCAGTCGGAGTTACAAGCAGCGGCGGCGGCTCTCCAGGGGATCCCTGCCCCTA
TCGAAAAAAGCCTTTGCGATGCCAATGCCCGTGGATCTATTACTGCCGCTATGGAAAAAATTGAAGACGCTTTCGACAGC
TTTGCTCAGGAAGTTGTGCCGCTCCTGCAGTAG

Upstream 100 bases:

>100_bases
GCCGGTGATAAAAATCTCTCCCTTCTTAAGATTGAGTCGCAATAGCTGGATTACAATCAAGCCAAAGTTGGCCAAGTCGA
GGGCAAAGGAGTCGGAGGAG

Downstream 100 bases:

>100_bases
TAAGAAAGTCCCAAAAGAGCTGAGTTGCCGATATTTTGATAGCCGATGCGTCGTCTTCTCCAGATTTTCATGCTGGGATT
GGCCTCTCTTTGGGCGGCGA

Product: iron-regulated protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MSRYLKLWTGIGLYVLVSGAACGETQKDPSAAGGGDPPALSQASPQQAAQMNPECRPIPVDGGGEGGEEGAGSRRPAVVL
SPEQRFQDRQILLDFADQVVIPAYEQLVADTQALSQAIQAFVQDPNAQTLQAARQAWSVARITWEESEAFAFGPAAYLGL
DADLDEWPLNEVEVLEVLNSGDPLTPETVAELESGQKGFHAVAFLLFGVDNNKSLQDFTERDREYLAALGPVLADTAAKL
LKSWTEGVQGLPAFREEWVKAGEGSKSYLTLQAAAEEIAQGILGMLDELGKVKIGEAFAQQNPFLLESRFAHHSLPEFQA
NVRSVQYAYLGGFRDRKGRGLSQFVRDINPNLDSQIQSELQAAAAALQGIPAPIEKSLCDANARGSITAAMEKIEDAFDS
FAQEVVPLLQ

Sequences:

>Translated_410_residues
MSRYLKLWTGIGLYVLVSGAACGETQKDPSAAGGGDPPALSQASPQQAAQMNPECRPIPVDGGGEGGEEGAGSRRPAVVL
SPEQRFQDRQILLDFADQVVIPAYEQLVADTQALSQAIQAFVQDPNAQTLQAARQAWSVARITWEESEAFAFGPAAYLGL
DADLDEWPLNEVEVLEVLNSGDPLTPETVAELESGQKGFHAVAFLLFGVDNNKSLQDFTERDREYLAALGPVLADTAAKL
LKSWTEGVQGLPAFREEWVKAGEGSKSYLTLQAAAEEIAQGILGMLDELGKVKIGEAFAQQNPFLLESRFAHHSLPEFQA
NVRSVQYAYLGGFRDRKGRGLSQFVRDINPNLDSQIQSELQAAAAALQGIPAPIEKSLCDANARGSITAAMEKIEDAFDS
FAQEVVPLLQ
>Mature_409_residues
SRYLKLWTGIGLYVLVSGAACGETQKDPSAAGGGDPPALSQASPQQAAQMNPECRPIPVDGGGEGGEEGAGSRRPAVVLS
PEQRFQDRQILLDFADQVVIPAYEQLVADTQALSQAIQAFVQDPNAQTLQAARQAWSVARITWEESEAFAFGPAAYLGLD
ADLDEWPLNEVEVLEVLNSGDPLTPETVAELESGQKGFHAVAFLLFGVDNNKSLQDFTERDREYLAALGPVLADTAAKLL
KSWTEGVQGLPAFREEWVKAGEGSKSYLTLQAAAEEIAQGILGMLDELGKVKIGEAFAQQNPFLLESRFAHHSLPEFQAN
VRSVQYAYLGGFRDRKGRGLSQFVRDINPNLDSQIQSELQAAAAALQGIPAPIEKSLCDANARGSITAAMEKIEDAFDSF
AQEVVPLLQ

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 44161; Mature: 44030

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYLKLWTGIGLYVLVSGAACGETQKDPSAAGGGDPPALSQASPQQAAQMNPECRPIPV
CCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEECC
DGGGEGGEEGAGSRRPAVVLSPEQRFQDRQILLDFADQVVIPAYEQLVADTQALSQAIQA
CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVQDPNAQTLQAARQAWSVARITWEESEAFAFGPAAYLGLDADLDEWPLNEVEVLEVLNS
HHCCCCHHHHHHHHHHHHHHEEEECCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHHHHC
GDPLTPETVAELESGQKGFHAVAFLLFGVDNNKSLQDFTERDREYLAALGPVLADTAAKL
CCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSWTEGVQGLPAFREEWVKAGEGSKSYLTLQAAAEEIAQGILGMLDELGKVKIGEAFAQ
HHHHHHHHCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCEEHHHHHHH
QNPFLLESRFAHHSLPEFQANVRSVQYAYLGGFRDRKGRGLSQFVRDINPNLDSQIQSEL
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
QAAAAALQGIPAPIEKSLCDANARGSITAAMEKIEDAFDSFAQEVVPLLQ
HHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRYLKLWTGIGLYVLVSGAACGETQKDPSAAGGGDPPALSQASPQQAAQMNPECRPIPV
CCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEECC
DGGGEGGEEGAGSRRPAVVLSPEQRFQDRQILLDFADQVVIPAYEQLVADTQALSQAIQA
CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVQDPNAQTLQAARQAWSVARITWEESEAFAFGPAAYLGLDADLDEWPLNEVEVLEVLNS
HHCCCCHHHHHHHHHHHHHHEEEECCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHHHHC
GDPLTPETVAELESGQKGFHAVAFLLFGVDNNKSLQDFTERDREYLAALGPVLADTAAKL
CCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSWTEGVQGLPAFREEWVKAGEGSKSYLTLQAAAEEIAQGILGMLDELGKVKIGEAFAQ
HHHHHHHHCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCEEHHHHHHH
QNPFLLESRFAHHSLPEFQANVRSVQYAYLGGFRDRKGRGLSQFVRDINPNLDSQIQSEL
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHH
QAAAAALQGIPAPIEKSLCDANARGSITAAMEKIEDAFDSFAQEVVPLLQ
HHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]