Click here to switch to the map view.

The map label for this gene is oxaA [H]

Identifier: 86609684

GI number: 86609684

Start: 2346624

End: 2347814

Strand: Reverse

Name: oxaA [H]

Synonym: CYB_2241

Alternate gene names: 86609684

Gene position: 2347814-2346624 (Counterclockwise)

Preceding gene: 86609686

Following gene: 86609682

Centisome position: 77.06

GC content: 57.93

Gene sequence:

>1191_bases
ATGGACTTCGGAGTCGGATTTCTCTCCAACAACGTCATGCTGCCGATCCTGGATTTTTTCTATGGGATCGTGCCCAGCTA
TGGACTGGCCATTATCTTCCTGACGTTGGTGATCCGCTTTGCCCTCTACCCGCTCAATGTGGGATCCATCCGCAACATGC
GGCGCATGAAGGTGATCAGCCCGGTGATGCAGCGGCGGATGCGAGAACTCCAGGAGAAATACCGAGACGACCCGCAGAAG
CTTCGGGAAGCCCAGGCCAAGCTTTACAGCGAGCTGGGGGCCAATCCCTTGGGGGGCTGCCTGCCACTGCTCATTCAAAT
GCCAGTGCTGTTTGCCCTGTTTGCCACCCTGCGGGGCTCCCCCTTTGCAGCGGTGACCTACGATGTCAACTTGCAGATCC
TGCCGGCGGAAATGGCGGCTGAGGTGGTGCCCGCCCCCTACGTCAGCCCCAGCAAGAACATTTTTGTCACCGACTCTCTC
CACAAGCCGGTGGTGCTGGTGGAACCCAAAGGCACCAAGGTTGCCGTTGGGGAGGAGGTGCAATTTCTGCTTCAAGGGCC
GGGGGGCAAGCCTTTTGAGCAGTTGGTGGCCGAAGCGGGTGGGGATCCCAATCTGTTACAGCCCACCTGGAAGATCACCA
AAGGAGAAGATCGTGCCCAGATAAAGCCGGATGGCACCTTGCTGGCTCTGCAGCCGGGGGATGTGACCGTGCAGGTGTCT
ATTCCCGGTTTGGCCTCTGAGACTGGCTTTCTGTTCATCGACAAGTTGGGCCGTGTGGGAGCCTTCGACGAGGATGGCAC
CATCCACTGGGATATCATCGCCATGATCGTCATCTTTGGGGTGTCCATTTACCTGAACCAGTACCTAACCAATGCCGGAC
AGGATACCGGCAAAGAGGATCCCAGCCAAAGTTCCATGGCTCGCATCACCCCTGTGCTGTTCTCGGCGATGTTCCTGTTC
TTCCCTCTGCCGGCAGGGGTTTTGCTCTACATCCTTGTCTCTAATATCTTCCAAACGGTGCAGACTTTCCTGCTCTCGCG
GGAGCCGTTGCCGGAGAACTTACAGCAGTTGGTGGAAGAGGAGCGTCGTCGGGCTGCCCAGGCGATCACGGTGGAGGCCA
AGGAAGTGGAAAAATCGACCAAGCCCAGAGCAGCCAAGGAGGGACGGGAATCCTTGCCCTTTGAGCCCTAG

Upstream 100 bases:

>100_bases
TCAGGTCTATCTGACGGATCCAGGGGACAAACCCTGAAAACGCCCTCGTCAACCGAACGGAAGCCATTACAATGGTTACG
GACATTTGCCAGCGCCCCTC

Downstream 100 bases:

>100_bases
GGGATCCTCGCTGTTGGGGTGGACTTGTGGTGGAGTGTTGATACCTGATACATTTACGCTGAACACTGCTGAACATCACT
GTTCAACTATGCAGCGATAG

Product: inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDFGVGFLSNNVMLPILDFFYGIVPSYGLAIIFLTLVIRFALYPLNVGSIRNMRRMKVISPVMQRRMRELQEKYRDDPQK
LREAQAKLYSELGANPLGGCLPLLIQMPVLFALFATLRGSPFAAVTYDVNLQILPAEMAAEVVPAPYVSPSKNIFVTDSL
HKPVVLVEPKGTKVAVGEEVQFLLQGPGGKPFEQLVAEAGGDPNLLQPTWKITKGEDRAQIKPDGTLLALQPGDVTVQVS
IPGLASETGFLFIDKLGRVGAFDEDGTIHWDIIAMIVIFGVSIYLNQYLTNAGQDTGKEDPSQSSMARITPVLFSAMFLF
FPLPAGVLLYILVSNIFQTVQTFLLSREPLPENLQQLVEEERRRAAQAITVEAKEVEKSTKPRAAKEGRESLPFEP

Sequences:

>Translated_396_residues
MDFGVGFLSNNVMLPILDFFYGIVPSYGLAIIFLTLVIRFALYPLNVGSIRNMRRMKVISPVMQRRMRELQEKYRDDPQK
LREAQAKLYSELGANPLGGCLPLLIQMPVLFALFATLRGSPFAAVTYDVNLQILPAEMAAEVVPAPYVSPSKNIFVTDSL
HKPVVLVEPKGTKVAVGEEVQFLLQGPGGKPFEQLVAEAGGDPNLLQPTWKITKGEDRAQIKPDGTLLALQPGDVTVQVS
IPGLASETGFLFIDKLGRVGAFDEDGTIHWDIIAMIVIFGVSIYLNQYLTNAGQDTGKEDPSQSSMARITPVLFSAMFLF
FPLPAGVLLYILVSNIFQTVQTFLLSREPLPENLQQLVEEERRRAAQAITVEAKEVEKSTKPRAAKEGRESLPFEP
>Mature_396_residues
MDFGVGFLSNNVMLPILDFFYGIVPSYGLAIIFLTLVIRFALYPLNVGSIRNMRRMKVISPVMQRRMRELQEKYRDDPQK
LREAQAKLYSELGANPLGGCLPLLIQMPVLFALFATLRGSPFAAVTYDVNLQILPAEMAAEVVPAPYVSPSKNIFVTDSL
HKPVVLVEPKGTKVAVGEEVQFLLQGPGGKPFEQLVAEAGGDPNLLQPTWKITKGEDRAQIKPDGTLLALQPGDVTVQVS
IPGLASETGFLFIDKLGRVGAFDEDGTIHWDIIAMIVIFGVSIYLNQYLTNAGQDTGKEDPSQSSMARITPVLFSAMFLF
FPLPAGVLLYILVSNIFQTVQTFLLSREPLPENLQQLVEEERRRAAQAITVEAKEVEKSTKPRAAKEGRESLPFEP

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=179, Percent_Identity=30.1675977653631, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 43710; Mature: 43710

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFGVGFLSNNVMLPILDFFYGIVPSYGLAIIFLTLVIRFALYPLNVGSIRNMRRMKVIS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
PVMQRRMRELQEKYRDDPQKLREAQAKLYSELGANPLGGCLPLLIQMPVLFALFATLRGS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PFAAVTYDVNLQILPAEMAAEVVPAPYVSPSKNIFVTDSLHKPVVLVEPKGTKVAVGEEV
CCEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEECCHHH
QFLLQGPGGKPFEQLVAEAGGDPNLLQPTWKITKGEDRAQIKPDGTLLALQPGDVTVQVS
EEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCEECCCCEEEEECCCCEEEEEE
IPGLASETGFLFIDKLGRVGAFDEDGTIHWDIIAMIVIFGVSIYLNQYLTNAGQDTGKED
CCCCCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PSQSSMARITPVLFSAMFLFFPLPAGVLLYILVSNIFQTVQTFLLSREPLPENLQQLVEE
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ERRRAAQAITVEAKEVEKSTKPRAAKEGRESLPFEP
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure
MDFGVGFLSNNVMLPILDFFYGIVPSYGLAIIFLTLVIRFALYPLNVGSIRNMRRMKVIS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
PVMQRRMRELQEKYRDDPQKLREAQAKLYSELGANPLGGCLPLLIQMPVLFALFATLRGS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PFAAVTYDVNLQILPAEMAAEVVPAPYVSPSKNIFVTDSLHKPVVLVEPKGTKVAVGEEV
CCEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEECCHHH
QFLLQGPGGKPFEQLVAEAGGDPNLLQPTWKITKGEDRAQIKPDGTLLALQPGDVTVQVS
EEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCEECCCCEEEEECCCCEEEEEE
IPGLASETGFLFIDKLGRVGAFDEDGTIHWDIIAMIVIFGVSIYLNQYLTNAGQDTGKED
CCCCCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PSQSSMARITPVLFSAMFLFFPLPAGVLLYILVSNIFQTVQTFLLSREPLPENLQQLVEE
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ERRRAAQAITVEAKEVEKSTKPRAAKEGRESLPFEP
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]