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The map label for this gene is nodT [H]

Identifier: 86609669

GI number: 86609669

Start: 2328106

End: 2329659

Strand: Reverse

Name: nodT [H]

Synonym: CYB_2225

Alternate gene names: 86609669

Gene position: 2329659-2328106 (Counterclockwise)

Preceding gene: 86609674

Following gene: 86609665

Centisome position: 76.47

GC content: 61.2

Gene sequence:

>1554_bases
ATGGCGATGCAAAATGGAGCCAGGGATCCGCTTCAACTTCCTCAACGGCAGACAAACTCGGCGGGATCCCAGTTGAACCT
TGCCTGTTCTGCCCCCTGTGGCCTACTGTTGAGCCTGCTCTGGGCTGTCCCTGCTCTTGCTCAGCCAGAAGCTCCCAGCT
CCGCTGCCTCTGCTCTGCCCAACAGCCGCGAAATCCTCACCCCCCCACCCCCCCCCACCCTATCGATTCCCCCCAACCCT
GCTGACTCCACCCCTGCGGCTGACCTGACTCTAAAGGGGGCTTTGACGGCTGAAGAATTGGTGGTGCCCCAATCCCCCTT
GCAGGTGCGCATTGAGCGCAGGGAGGGCTTGTCTTTGGAAGAAGCTCTGGAGATCGCCGTTGCCCAGAACCCGGCTGTGC
AGCAGGCCAGACTGGCCGTCGAGCGGGCCGAGGCCGGGGTAGCCCTGGCTCAAGCTGCCTTTGCTCCCACCCTCTCCAGC
CGTGCCAACTACCAGTACAGTGAGGCTCCCTCTCCGGGTGGTGGGCCAAGGCGCGAATCCCATACCCTCTCGGCCAGTGT
GGTGCGGGTGGAGTATACCGCTTTTGACAGTGGCCTCAGGGAGCAAAACCTGAAGCTGGCCCAAGAAGCGCTGCGCATCG
CCCAACTGCAGCTGGAGCAAACGCTGCAGACGGTCAAACAAGCTGTGGCCAATGCCTACTACGATCTGCAAAGCGCAGAT
GCCAGGGTTGCCATCAGCCAAGCTGCCGTCGAAAGTTCCGAAGCCACCCTGCGGGATGCTCAAGCCCGAGAACGGGCCGG
GCTGGGTACCCGCTTTGAGATTCTCCAGGCAGAGACGGAATTGGCCAACAATCGACAAACCTTGCTGGTGGCCCAGAACA
CCCAGCAACTGAATCGCCGCCGCCTGGCCGAACTGCTGAATTTTCCCAGCCCCACCGACGTGTTGGCCAGCGACCGCATT
GAGCCGATGGGAGAGTGGGATCTCAGCCTGGAAGAGACCATCATTGCTGCCTTTGCCCAACGACAGGAATTGGAGCGCCG
ACGCCGAGAATTGGAGCAGGCCCAAAGCCGCCTGCGCCTGGCACAGGCCCGCAATGGCCCCCGAATTGGCTTATTCGCCA
GCCTCGATGCCGTTAACGATTTCAACGCCAGCCGCAACAGTTTTGATGTTGGCTATTCGGTGGGAGCCAATTTCAGCTTG
ACTTGGTTCGATGGAGGAGAAGCGGCTGCCCAAGCCCGCCAAGCCCAGATCGATGGACAGGTGGCCGTGAGCAACTTCGT
CGGCACCCGCAATGAAATCCAGCGGGGGGTGGAAGAAGCCTTCCTGACCCTCAGCTCCAGCCGCGAACAGATCGACTCGG
CCAAAGTGGCAATTGCCTCAGCAGAAGAGAGCCTGCGCTTGGCCCGGCTGCGCCTGCAAGCGGGGGTGGGCACCCAAACG
GAGGTGATCAATGCTGAAGCTGCCCTCACCACTGCCCGTGGCAACCTTTCCAATGCTGTAATCGCCTACAATCGCGCCCT
GGTACAACTGAAACGGGCCATTGGCAGCCTTTGA

Upstream 100 bases:

>100_bases
CTGGCCCGAACAGGGCAGCCAGCGAGCCTGCGGAAAACCGTCTTATCTTTGTCCTTCATTTTGCGATACTGCTAGGGGTG
ATGTTGAGAATGACCGCACG

Downstream 100 bases:

>100_bases
CTTGAGCCTTTCTCCCTCACTCCCAGCCCTTCTTCCAAAAGGAGAGGGGTGCTATGGATACCGCGACGAAACAGTTCTAT
TCCAACTTGAGCTGTTGTGA

Product: tranporter, outer membrane factor (OMF) family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MAMQNGARDPLQLPQRQTNSAGSQLNLACSAPCGLLLSLLWAVPALAQPEAPSSAASALPNSREILTPPPPPTLSIPPNP
ADSTPAADLTLKGALTAEELVVPQSPLQVRIERREGLSLEEALEIAVAQNPAVQQARLAVERAEAGVALAQAAFAPTLSS
RANYQYSEAPSPGGGPRRESHTLSASVVRVEYTAFDSGLREQNLKLAQEALRIAQLQLEQTLQTVKQAVANAYYDLQSAD
ARVAISQAAVESSEATLRDAQARERAGLGTRFEILQAETELANNRQTLLVAQNTQQLNRRRLAELLNFPSPTDVLASDRI
EPMGEWDLSLEETIIAAFAQRQELERRRRELEQAQSRLRLAQARNGPRIGLFASLDAVNDFNASRNSFDVGYSVGANFSL
TWFDGGEAAAQARQAQIDGQVAVSNFVGTRNEIQRGVEEAFLTLSSSREQIDSAKVAIASAEESLRLARLRLQAGVGTQT
EVINAEAALTTARGNLSNAVIAYNRALVQLKRAIGSL

Sequences:

>Translated_517_residues
MAMQNGARDPLQLPQRQTNSAGSQLNLACSAPCGLLLSLLWAVPALAQPEAPSSAASALPNSREILTPPPPPTLSIPPNP
ADSTPAADLTLKGALTAEELVVPQSPLQVRIERREGLSLEEALEIAVAQNPAVQQARLAVERAEAGVALAQAAFAPTLSS
RANYQYSEAPSPGGGPRRESHTLSASVVRVEYTAFDSGLREQNLKLAQEALRIAQLQLEQTLQTVKQAVANAYYDLQSAD
ARVAISQAAVESSEATLRDAQARERAGLGTRFEILQAETELANNRQTLLVAQNTQQLNRRRLAELLNFPSPTDVLASDRI
EPMGEWDLSLEETIIAAFAQRQELERRRRELEQAQSRLRLAQARNGPRIGLFASLDAVNDFNASRNSFDVGYSVGANFSL
TWFDGGEAAAQARQAQIDGQVAVSNFVGTRNEIQRGVEEAFLTLSSSREQIDSAKVAIASAEESLRLARLRLQAGVGTQT
EVINAEAALTTARGNLSNAVIAYNRALVQLKRAIGSL
>Mature_516_residues
AMQNGARDPLQLPQRQTNSAGSQLNLACSAPCGLLLSLLWAVPALAQPEAPSSAASALPNSREILTPPPPPTLSIPPNPA
DSTPAADLTLKGALTAEELVVPQSPLQVRIERREGLSLEEALEIAVAQNPAVQQARLAVERAEAGVALAQAAFAPTLSSR
ANYQYSEAPSPGGGPRRESHTLSASVVRVEYTAFDSGLREQNLKLAQEALRIAQLQLEQTLQTVKQAVANAYYDLQSADA
RVAISQAAVESSEATLRDAQARERAGLGTRFEILQAETELANNRQTLLVAQNTQQLNRRRLAELLNFPSPTDVLASDRIE
PMGEWDLSLEETIIAAFAQRQELERRRRELEQAQSRLRLAQARNGPRIGLFASLDAVNDFNASRNSFDVGYSVGANFSLT
WFDGGEAAAQARQAQIDGQVAVSNFVGTRNEIQRGVEEAFLTLSSSREQIDSAKVAIASAEESLRLARLRLQAGVGTQTE
VINAEAALTTARGNLSNAVIAYNRALVQLKRAIGSL

Specific function: Required For Proper Expression Of Outer Membrane Protein Genes Such As Ompf, Nmpc, Protein 2, Hemolysin, Colicin V, Or Colicin E1. May Be Specialized For Signal Sequence Independent, Extracellular Secretion In Gram-Negative Bacteria. [C]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

None

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 55591; Mature: 55460

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMQNGARDPLQLPQRQTNSAGSQLNLACSAPCGLLLSLLWAVPALAQPEAPSSAASALP
CCCCCCCCCHHHCCCHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHCC
NSREILTPPPPPTLSIPPNPADSTPAADLTLKGALTAEELVVPQSPLQVRIERREGLSLE
CCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCEEEEEHHCCCCHH
EALEIAVAQNPAVQQARLAVERAEAGVALAQAAFAPTLSSRANYQYSEAPSPGGGPRRES
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
HTLSASVVRVEYTAFDSGLREQNLKLAQEALRIAQLQLEQTLQTVKQAVANAYYDLQSAD
CCEEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ARVAISQAAVESSEATLRDAQARERAGLGTRFEILQAETELANNRQTLLVAQNTQQLNRR
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
RLAELLNFPSPTDVLASDRIEPMGEWDLSLEETIIAAFAQRQELERRRRELEQAQSRLRL
HHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQARNGPRIGLFASLDAVNDFNASRNSFDVGYSVGANFSLTWFDGGEAAAQARQAQIDGQ
HHHCCCCEEEEEEECCCHHCCCCCCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCCC
VAVSNFVGTRNEIQRGVEEAFLTLSSSREQIDSAKVAIASAEESLRLARLRLQAGVGTQT
EEHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCCCH
EVINAEAALTTARGNLSNAVIAYNRALVQLKRAIGSL
HEEECHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AMQNGARDPLQLPQRQTNSAGSQLNLACSAPCGLLLSLLWAVPALAQPEAPSSAASALP
CCCCCCCCHHHCCCHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHCC
NSREILTPPPPPTLSIPPNPADSTPAADLTLKGALTAEELVVPQSPLQVRIERREGLSLE
CCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCEEEEEHHCCCCHH
EALEIAVAQNPAVQQARLAVERAEAGVALAQAAFAPTLSSRANYQYSEAPSPGGGPRRES
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
HTLSASVVRVEYTAFDSGLREQNLKLAQEALRIAQLQLEQTLQTVKQAVANAYYDLQSAD
CCEEEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ARVAISQAAVESSEATLRDAQARERAGLGTRFEILQAETELANNRQTLLVAQNTQQLNRR
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
RLAELLNFPSPTDVLASDRIEPMGEWDLSLEETIIAAFAQRQELERRRRELEQAQSRLRL
HHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQARNGPRIGLFASLDAVNDFNASRNSFDVGYSVGANFSLTWFDGGEAAAQARQAQIDGQ
HHHCCCCEEEEEEECCCHHCCCCCCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCCC
VAVSNFVGTRNEIQRGVEEAFLTLSSSREQIDSAKVAIASAEESLRLARLRLQAGVGTQT
EEHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCCCH
EVINAEAALTTARGNLSNAVIAYNRALVQLKRAIGSL
HEEECHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2338917; 2622339 [H]