| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609636
Identifier: 86609636
GI number: 86609636
Start: 2294576
End: 2294989
Strand: Reverse
Name: 86609636
Synonym: CYB_2190
Alternate gene names: NA
Gene position: 2294989-2294576 (Counterclockwise)
Preceding gene: 86609638
Following gene: 86609635
Centisome position: 75.33
GC content: 57.0
Gene sequence:
>414_bases ATGGTTGAAAGGAGAAGAGCCATTCCGGAACCCCTATCTCTGACGGTCAGCTTGCGCGGCAGCCGCGAGGCGCTGGAAAA CTGCCAGGTCTTTCACCTGACTGGCCTTCTGGATGCCTTTTCCGAGCCGGTCTTTGTTAAGGTGGTCACCAAATACCTGG AAGAGGGATCCCCTAACCTGATCCTGGATTTGACAGGGATCGACTTCATCGACAGCTCTGGCGTCGGCGCCCTGGTGCAA TTGGCCAAGCTGGTGCAGGGCCGCGCAGGTATCTTTCAGGTGGTGAGCAACCCCCGCATTACCCAAACGGTGAAACTGGT GCGCCTGGAGAAGTTCCTATCTTTGCGCAACTCCTTGCAGGAAGCCTTGGATCGCCTGAAGGAAGGAAGTACGGGCAGTA CAGAGACCGCCTGA
Upstream 100 bases:
>100_bases AAAAATACCGTCTCCCGCGGAGAACGGGGATGCTAAGCTATCTCCACACCCGAGATTGAACCCACCCTGGGGCCTCTCTC AGGTGTTCCCTTCTGTCGAG
Downstream 100 bases:
>100_bases TACGTAATAAGTATGGGTCTGGGAACCTTTTGGGGGATCAGTGCTGGAGCAGGGGATCCCGACTGGATCACGGTCAAAGC AGCCCGCATCCTCAGCACGG
Product: anti-anti-sigma factor family protein
Products: NA
Alternate protein names: Anti-Anti-Sigma Regulatory Factor; STAS Domain-Containing Protein; Anti-Anti-Sigma Regulatory Factor SpoIIAA; Anti-Sigma-Factor Antagonist Domain-Containing Protein; Anti-Anti-Sigma Regulatory Factor RsbV; Anti-Anti-Sigma Factor; Anti-Anti-Sigma Factor Family Protein; Anti-Sigma F Factor Antagonist; Anti-Anti-Sigma Regulatory Factor Spoiiaa; Anti-Sigma F Factor
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQ LAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQEALDRLKEGSTGSTETA
Sequences:
>Translated_137_residues MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQ LAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQEALDRLKEGSTGSTETA >Mature_137_residues MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQ LAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQEALDRLKEGSTGSTETA
Specific function: Unknown
COG id: COG1366
COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15011; Mature: 15011
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS50801 STAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNL CCCCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE ILDLTGIDFIDSSGVGALVQLAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQ EEEECCCCEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH EALDRLKEGSTGSTETA HHHHHHHCCCCCCCCCC >Mature Secondary Structure MVERRRAIPEPLSLTVSLRGSREALENCQVFHLTGLLDAFSEPVFVKVVTKYLEEGSPNL CCCCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE ILDLTGIDFIDSSGVGALVQLAKLVQGRAGIFQVVSNPRITQTVKLVRLEKFLSLRNSLQ EEEECCCCEECCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH EALDRLKEGSTGSTETA HHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA