| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is fliY [H]
Identifier: 86609571
GI number: 86609571
Start: 2217040
End: 2217903
Strand: Direct
Name: fliY [H]
Synonym: CYB_2124
Alternate gene names: 86609571
Gene position: 2217040-2217903 (Clockwise)
Preceding gene: 86609567
Following gene: 86609572
Centisome position: 72.77
GC content: 57.64
Gene sequence:
>864_bases ATGTCTGTTTCTCGACGCCGATCCCTACAAGCCCTTTGCTTGACCCTGGCCGGATGCTGGGCTTTAAGTGCACACCAGGG ATCCCTGCTGGCCCAAGGTAGCGATTTGTTGGCTCAAGTTCAAGAGCGGGGGGTGCTCCGGATTTCCACCGACTCCAATT ACCGGCCTCAGAGCTACCGCAACCCTGACGGCAGTTGGGAAGGATTTGACGTGGATGTGGCGCGCGAGATCGCCAAGCGC TTGGGGGTAGAGGCTGAGTTTCTGGATATCAACTTCGATGTCATCACCGCCGGATCTTGGAATGGCCGCTGGGATGTCAA TGTCGGGTCGATGACCGTGACTGCCGAGCGCCAGAAAGCTCTGCTGTTTACCATTCCCTACTACTACACCCCCGCCAGCT TCGTGGTCCACCAAGCCTCGACCTTGACAGATATCGCCGCCTTGGAAGGAAAGCGAGTTGGGGTGGGCACCGCCACCACC TATCAAGCCTACCTGGAGGGCAACCTCACCCTGGAAGGAGAGACCATCCAAGTTCCGGCCCCGCGGGTGGACATTCGCAT CTACGACACCGATAGCCTGGCTCTGCAGGATTTGGCACTGGGGGATGGCACCCGCCTGGATGCAGTCTTGACAGCTTTGC CGACGGCTGAAAACGCCATTCGGGAAGGACTGCCCCTGAAAACTCTGGGGGATCCGGTCTACTATGAAGCCTTGGCTGTG GCCTTGGATCGCTCCAGCCCTGCCCCTTCCGAGAGCTTGCAAGCCAAAATTAACGAAATTTTAGAATCCATGCACGCCGA CGGCACGCTAACAGCCCTCTCGAAGCGGTATTACGGCATTGATCTGACGAAAAAAGCTGAGTGA
Upstream 100 bases:
>100_bases TGTCAGGTGATACTACCTTGCAACGGGAATTGTGACAGCCTTGGATAGCTTGGATGGATTCCAATGGGTTTGCCCTTCAC CTTCATCTGAGGTTTTGCCG
Downstream 100 bases:
>100_bases GCAAAGACTCTATCCCACTGGAGCAGCCCATTTACCCACCGCCCCGGATTCGAAAAGGGATCCCGTTCCCGGTGGCCCAG GGGTTGTGGTTGGTTTTGTG
Product: cystine ABC transporter, periplasmic cystine-binding protein
Products: NA
Alternate protein names: CBP; Protein fliY; Sulfate starvation-induced protein 7; SSI7 [H]
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MSVSRRRSLQALCLTLAGCWALSAHQGSLLAQGSDLLAQVQERGVLRISTDSNYRPQSYRNPDGSWEGFDVDVAREIAKR LGVEAEFLDINFDVITAGSWNGRWDVNVGSMTVTAERQKALLFTIPYYYTPASFVVHQASTLTDIAALEGKRVGVGTATT YQAYLEGNLTLEGETIQVPAPRVDIRIYDTDSLALQDLALGDGTRLDAVLTALPTAENAIREGLPLKTLGDPVYYEALAV ALDRSSPAPSESLQAKINEILESMHADGTLTALSKRYYGIDLTKKAE
Sequences:
>Translated_287_residues MSVSRRRSLQALCLTLAGCWALSAHQGSLLAQGSDLLAQVQERGVLRISTDSNYRPQSYRNPDGSWEGFDVDVAREIAKR LGVEAEFLDINFDVITAGSWNGRWDVNVGSMTVTAERQKALLFTIPYYYTPASFVVHQASTLTDIAALEGKRVGVGTATT YQAYLEGNLTLEGETIQVPAPRVDIRIYDTDSLALQDLALGDGTRLDAVLTALPTAENAIREGLPLKTLGDPVYYEALAV ALDRSSPAPSESLQAKINEILESMHADGTLTALSKRYYGIDLTKKAE >Mature_286_residues SVSRRRSLQALCLTLAGCWALSAHQGSLLAQGSDLLAQVQERGVLRISTDSNYRPQSYRNPDGSWEGFDVDVAREIAKRL GVEAEFLDINFDVITAGSWNGRWDVNVGSMTVTAERQKALLFTIPYYYTPASFVVHQASTLTDIAALEGKRVGVGTATTY QAYLEGNLTLEGETIQVPAPRVDIRIYDTDSLALQDLALGDGTRLDAVLTALPTAENAIREGLPLKTLGDPVYYEALAVA LDRSSPAPSESLQAKINEILESMHADGTLTALSKRYYGIDLTKKAE
Specific function: Part of a binding-protein-dependent transport system for cystine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=252, Percent_Identity=32.9365079365079, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787088, Length=238, Percent_Identity=28.1512605042017, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788648, Length=242, Percent_Identity=28.099173553719, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787085, Length=216, Percent_Identity=29.1666666666667, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788649, Length=246, Percent_Identity=25.609756097561, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787031, Length=237, Percent_Identity=25.7383966244726, Blast_Score=70, Evalue=1e-13,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 31231; Mature: 31099
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3 ; PS00995 TCP1_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSRRRSLQALCLTLAGCWALSAHQGSLLAQGSDLLAQVQERGVLRISTDSNYRPQSYR CCCCHHHHHHHHHHHHHHHHEEECCCCCEEECCHHHHHHHHHCCEEEEECCCCCCCCCCC NPDGSWEGFDVDVAREIAKRLGVEAEFLDINFDVITAGSWNGRWDVNVGSMTVTAERQKA CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEECCEEEEECCCCE LLFTIPYYYTPASFVVHQASTLTDIAALEGKRVGVGTATTYQAYLEGNLTLEGETIQVPA EEEEECCEECCHHHHHCCHHHHHHHHHHCCCEEECCCCCEEEEEEECCEEECCCEEECCC PRVDIRIYDTDSLALQDLALGDGTRLDAVLTALPTAENAIREGLPLKTLGDPVYYEALAV CEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHH ALDRSSPAPSESLQAKINEILESMHADGTLTALSKRYYGIDLTKKAE EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHEECCEEEECCC >Mature Secondary Structure SVSRRRSLQALCLTLAGCWALSAHQGSLLAQGSDLLAQVQERGVLRISTDSNYRPQSYR CCCHHHHHHHHHHHHHHHHEEECCCCCEEECCHHHHHHHHHCCEEEEECCCCCCCCCCC NPDGSWEGFDVDVAREIAKRLGVEAEFLDINFDVITAGSWNGRWDVNVGSMTVTAERQKA CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEECCEEEEECCCCE LLFTIPYYYTPASFVVHQASTLTDIAALEGKRVGVGTATTYQAYLEGNLTLEGETIQVPA EEEEECCEECCHHHHHCCHHHHHHHHHHCCCEEECCCCCEEEEEEECCEEECCCEEECCC PRVDIRIYDTDSLALQDLALGDGTRLDAVLTALPTAENAIREGLPLKTLGDPVYYEALAV CEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHH ALDRSSPAPSESLQAKINEILESMHADGTLTALSKRYYGIDLTKKAE EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]