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The map label for this gene is ydcM [C]

Identifier: 86609564

GI number: 86609564

Start: 2210859

End: 2212052

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_2117

Alternate gene names: 86609564

Gene position: 2212052-2210859 (Counterclockwise)

Preceding gene: 86609565

Following gene: 86609560

Centisome position: 72.61

GC content: 55.28

Gene sequence:

>1194_bases
ATGAGCCAAGTCCTGACCATATCCTGTAAGCTCAAGGTGTTCCCGTCACAAGCCGCCAAATTGGACGCGACGATGGATGT
CTTTGTGCAGGCATTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTGGCGGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGATGCACGTATCTTCTCATTTCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGAAAGGGCGAGAGCGCTTTGAACTAGCCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGTTCCAACCCAAAATCTGCCACCCTGGTCAAGCGGAAAGACGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAACCCGCCCAAGCAACAAGATACCGACAGGGTGATCGGGGTGGACTTGGGCAGGACGGATATCGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACCGAATCCGAGACCACTACTCCAAGCTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCCGTCAACTGTTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAATAGCGCTCTTGCTCTGGAAGA
CTTGACAGGGATTCGGGAAAGGGTCAATCAACAGCCACGCAGCAAGACAGAGCGTAGGCGGGCAAATAGTTGGGCGTTTT
ATCAACTCCGTCAATTTTTGGAGTACAAGGCTCTGCGTGCGGGGGTTGCTCTGATTCTTGTTCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGCGCAATCCTATCGCAGTGGAAAGAAGTTTAAGTGTGGACA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCAAACGTAATTGCGCTCTTGGGGGCTGCCGTAAACCAGCCTGGAG
GTCCGGGCCTGTTTTGTTCTCTGGTAGGGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
TTGGCAGGATGAGGGATCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGGACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGTCGGGTAGTTTACCCAAATTCCTGTTCGATGATCCGCCATCGGGCAGTGATCACGCCTGGCTCTAGGCTGA
GGCGGCTGACGACAAGTTCC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSQVLTISCKLKVFPSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVKGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICV
EKNPPKQQDTDRVIGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVGQSRLRATESPLRTA

Sequences:

>Translated_397_residues
MSQVLTISCKLKVFPSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVKGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICV
EKNPPKQQDTDRVIGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVGQSRLRATESPLRTA
>Mature_396_residues
SQVLTISCKLKVFPSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVKGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVE
KNPPKQQDTDRVIGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTSQ
TCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVGQSRLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=236, Percent_Identity=27.9661016949153, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44947; Mature: 44816

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVFPSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKNPPKQQDTDRVIGVDLGR
CCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPGGPGLFCSLVGQSRLRATESPLRTA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVFPSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKNPPKQQDTDRVIGVDLGR
CCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSALALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPGGPGLFCSLVGQSRLRATESPLRTA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]