Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609549

Identifier: 86609549

GI number: 86609549

Start: 2197590

End: 2198528

Strand: Direct

Name: 86609549

Synonym: CYB_2102

Alternate gene names: NA

Gene position: 2197590-2198528 (Clockwise)

Preceding gene: 86609545

Following gene: 86609550

Centisome position: 72.13

GC content: 60.06

Gene sequence:

>939_bases
GTGATCATGCTGAAACGAATCGGTCGCGTCTGCCGGCCTCTGCTGGCCATTGCCCTGGCCTTGACCTTGGCCCTGGCTCC
CATAGGCGCTGTTTGGGCACGCAGTGGCGGTCGCATTGGCGGCGGATCTTTCCGGTCTCCGACGTTCTCTGCCCCCCGCT
CGATTGGCCCGCACTACTCAGCTCCTGTCTACCCCAGCTATGGAGGCGGCTTTGGTTTTCCGCTGCTGGTGCCCTTTTTC
TGGGGAGGGGGGGGTGGCGGCCTGCTGACGCTGCTGCTCTTGGTTGGGGCAGGTAGCTTTTTGGTGCAGACGCTGCGCTC
GGGGATCAGATCCGAAGAAGGGGACGATAGCATTGGGGTTCGCGATCCCCAGGTAACTGTTGCGCAGGTAAAAGTGGGAC
TGCTGGCCAGCGCCCGGCAACTGCAAAAAGACATGAACGCCCTGGCTCTGGAGGCGGATACTCAGTCGCCAGAAGGGCTG
AGCCAACTGTTGCAAGAGGTCACCCTTGGCTTGATGCGCTACAGCGACTACTGGGCCTATGGCCATGCCCAAGCGGAGAA
GCTGCCCCTCTCCCGCGCCGAATCCCTGTTCTATCAAGCCTCTTTACAAGAACGGAGCAAGTTCAGCGTCGAAAGCCTCA
GCAACCGCAACAACCAGATCCAACAAGTCTCCCAAGCGGCGCTGCAGCGATCTGCTGCTGGGATCCCAGATGTTGGCGAG
TACCTGCTGGTAACTCTACTGGTTGCGTATCGTGGTAACTTGGGTACACTACCTGTAGTTAACTCCATGGCGGATCTGCG
GCAGTGCCTGTTGCAGCTGGCTTCGATTCCGGCAGATCGGATTGTGGCCATCGAAGTGCTGTGGACGCCGCAGTTGGAGG
GAGACACCCTGTCGGCAGAGGCGCTGTTGACCGAGTACCCGGAAATGCGGCTCCTTTGA

Upstream 100 bases:

>100_bases
AAGTGAGATGGCCGGGTGGGGGATCGGTTTCCGCCCCTATTCCTGCCAACGAGAAAGCGTAGAATTAAGAAAGACTAGCC
CCGTGATGGACGAAAACATT

Downstream 100 bases:

>100_bases
GAGCCTTTGGGCGATAGACGGCAACTGTTGGCTGAGTGTCTCAACTCCTCGGGATCCCCGCCGCTCAGGCTAGGGAGGTT
GTATGTCCGGGTTAGATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MIMLKRIGRVCRPLLAIALALTLALAPIGAVWARSGGRIGGGSFRSPTFSAPRSIGPHYSAPVYPSYGGGFGFPLLVPFF
WGGGGGGLLTLLLLVGAGSFLVQTLRSGIRSEEGDDSIGVRDPQVTVAQVKVGLLASARQLQKDMNALALEADTQSPEGL
SQLLQEVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSVESLSNRNNQIQQVSQAALQRSAAGIPDVGE
YLLVTLLVAYRGNLGTLPVVNSMADLRQCLLQLASIPADRIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL

Sequences:

>Translated_312_residues
MIMLKRIGRVCRPLLAIALALTLALAPIGAVWARSGGRIGGGSFRSPTFSAPRSIGPHYSAPVYPSYGGGFGFPLLVPFF
WGGGGGGLLTLLLLVGAGSFLVQTLRSGIRSEEGDDSIGVRDPQVTVAQVKVGLLASARQLQKDMNALALEADTQSPEGL
SQLLQEVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSVESLSNRNNQIQQVSQAALQRSAAGIPDVGE
YLLVTLLVAYRGNLGTLPVVNSMADLRQCLLQLASIPADRIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL
>Mature_312_residues
MIMLKRIGRVCRPLLAIALALTLALAPIGAVWARSGGRIGGGSFRSPTFSAPRSIGPHYSAPVYPSYGGGFGFPLLVPFF
WGGGGGGLLTLLLLVGAGSFLVQTLRSGIRSEEGDDSIGVRDPQVTVAQVKVGLLASARQLQKDMNALALEADTQSPEGL
SQLLQEVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSVESLSNRNNQIQQVSQAALQRSAAGIPDVGE
YLLVTLLVAYRGNLGTLPVVNSMADLRQCLLQLASIPADRIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL

Specific function: Unknown

COG id: COG4371

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33485; Mature: 33485

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMLKRIGRVCRPLLAIALALTLALAPIGAVWARSGGRIGGGSFRSPTFSAPRSIGPHYS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
APVYPSYGGGFGFPLLVPFFWGGGGGGLLTLLLLVGAGSFLVQTLRSGIRSEEGDDSIGV
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
RDPQVTVAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAY
CCCCEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GHAQAEKLPLSRAESLFYQASLQERSKFSVESLSNRNNQIQQVSQAALQRSAAGIPDVGE
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
YLLVTLLVAYRGNLGTLPVVNSMADLRQCLLQLASIPADRIVAIEVLWTPQLEGDTLSAE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHH
ALLTEYPEMRLL
HHHHHCCCCCCC
>Mature Secondary Structure
MIMLKRIGRVCRPLLAIALALTLALAPIGAVWARSGGRIGGGSFRSPTFSAPRSIGPHYS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
APVYPSYGGGFGFPLLVPFFWGGGGGGLLTLLLLVGAGSFLVQTLRSGIRSEEGDDSIGV
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
RDPQVTVAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAY
CCCCEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GHAQAEKLPLSRAESLFYQASLQERSKFSVESLSNRNNQIQQVSQAALQRSAAGIPDVGE
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
YLLVTLLVAYRGNLGTLPVVNSMADLRQCLLQLASIPADRIVAIEVLWTPQLEGDTLSAE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHH
ALLTEYPEMRLL
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA