| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is braE [H]
Identifier: 86609531
GI number: 86609531
Start: 2179781
End: 2180740
Strand: Reverse
Name: braE [H]
Synonym: CYB_2083
Alternate gene names: 86609531
Gene position: 2180740-2179781 (Counterclockwise)
Preceding gene: 86609532
Following gene: 86609530
Centisome position: 71.58
GC content: 59.38
Gene sequence:
>960_bases ATGTTGAGCTACGGCATTTTCTTTTTGATTTTGGTGGGGATCTACGGCGTGCTGGTGCTGGGCCTCAATATCCAGTGGGG CTACGCCGGCATGTTCAACATCGGGGTGGGGGCTTTTTTTGCCGTGGGAGCCTATGCCAGCGCCATTGTCACCACACCCC CAAGCGCCGAGCATTTGGGCGGCTTCAATCTGCCCTTTTGGGTGGGTTTTGCCATAGCTGTGGCCGTCGCCGGGGCGATT GCCTTTTTGATCGGCTTGATTACCCTGAAGCTGCGTTCCGACTACTTGGCCATCGCCACCATCGGCATTGCTGAGATCAT CAGCCAAATCCTGAGAAATGAGGGCTGGCTGACCAATGGCGTACGGGGAATTACCCGCATTCCGCGACCCTTTCGCGGCT GGATCCCAGGTCAGGATACCCTTCTCTACTTGGGCTTGGTGCTGGTCATTTTGGCGGTGGTCTATTGGGCTGCGGAGCGG GCCTATCGCTCCCCCTGGGGGCGGGTGCTGCGGGCCATTCGCGAGGATGAACCGGCAACCCTGGCTGCCGGCAAAGATGT GCTCCAGTTTCGCCTGCAAGCGTTTGTGCTGGGATCCATGCTCATGGGGTTGGCGGGGGCCCTCTACGCCCATTTTGTCA ATTTCATCAGCCCAGAAGCCTTTCAACCGGAGTTTGCCACCTTCATCGTTTGGGTAATGCTGATCGCGGGGGGCAGTGGC AACAATCGCGGCGCCTTGCTGGGAGCGCTGGTAATTTGGGGGGTGTGGTCGGGCAGCGAGTGGCTCACCAACCGTTTGCC GCCCCAGTGGGCCACCCGGGCTGGCCCTTTGCGCATTTTGTTGATCGGGATCCTGCTCCAGGTGATTCTTCTGACGCGCT CTCAAGGATTGTTGCCTGAACGTCCGCCCAAGCCCGTCTTGGGCACTTCTCCTTCGCCTAAGCAGAACCCCGCAGGATAG
Upstream 100 bases:
>100_bases ACCCGGCCTATAAAACCGGGGTGGCCTTCGCCATTTTGGTACTGCTGCTGATCTTCCGACCCACGGGATTACTGGGATCC CCGGGTGGGGGGGATGTCTG
Downstream 100 bases:
>100_bases GATTGGGTCGGCTCCAGCCGTTGTTGACGTGTTTGAGATAACCCAGCCCTCTGCCGCCATGACTCCGCGCCCCAAGGAAA CCGACCCTTCCTGGCCACCT
Product: hydrophobic amino acid ABC transporter permease
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MLSYGIFFLILVGIYGVLVLGLNIQWGYAGMFNIGVGAFFAVGAYASAIVTTPPSAEHLGGFNLPFWVGFAIAVAVAGAI AFLIGLITLKLRSDYLAIATIGIAEIISQILRNEGWLTNGVRGITRIPRPFRGWIPGQDTLLYLGLVLVILAVVYWAAER AYRSPWGRVLRAIREDEPATLAAGKDVLQFRLQAFVLGSMLMGLAGALYAHFVNFISPEAFQPEFATFIVWVMLIAGGSG NNRGALLGALVIWGVWSGSEWLTNRLPPQWATRAGPLRILLIGILLQVILLTRSQGLLPERPPKPVLGTSPSPKQNPAG
Sequences:
>Translated_319_residues MLSYGIFFLILVGIYGVLVLGLNIQWGYAGMFNIGVGAFFAVGAYASAIVTTPPSAEHLGGFNLPFWVGFAIAVAVAGAI AFLIGLITLKLRSDYLAIATIGIAEIISQILRNEGWLTNGVRGITRIPRPFRGWIPGQDTLLYLGLVLVILAVVYWAAER AYRSPWGRVLRAIREDEPATLAAGKDVLQFRLQAFVLGSMLMGLAGALYAHFVNFISPEAFQPEFATFIVWVMLIAGGSG NNRGALLGALVIWGVWSGSEWLTNRLPPQWATRAGPLRILLIGILLQVILLTRSQGLLPERPPKPVLGTSPSPKQNPAG >Mature_319_residues MLSYGIFFLILVGIYGVLVLGLNIQWGYAGMFNIGVGAFFAVGAYASAIVTTPPSAEHLGGFNLPFWVGFAIAVAVAGAI AFLIGLITLKLRSDYLAIATIGIAEIISQILRNEGWLTNGVRGITRIPRPFRGWIPGQDTLLYLGLVLVILAVVYWAAER AYRSPWGRVLRAIREDEPATLAAGKDVLQFRLQAFVLGSMLMGLAGALYAHFVNFISPEAFQPEFATFIVWVMLIAGGSG NNRGALLGALVIWGVWSGSEWLTNRLPPQWATRAGPLRILLIGILLQVILLTRSQGLLPERPPKPVLGTSPSPKQNPAG
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=317, Percent_Identity=30.2839116719243, Blast_Score=120, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 34421; Mature: 34421
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSYGIFFLILVGIYGVLVLGLNIQWGYAGMFNIGVGAFFAVGAYASAIVTTPPSAEHLG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHCC GFNLPFWVGFAIAVAVAGAIAFLIGLITLKLRSDYLAIATIGIAEIISQILRNEGWLTNG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC VRGITRIPRPFRGWIPGQDTLLYLGLVLVILAVVYWAAERAYRSPWGRVLRAIREDEPAT CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCH LAAGKDVLQFRLQAFVLGSMLMGLAGALYAHFVNFISPEAFQPEFATFIVWVMLIAGGSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC NNRGALLGALVIWGVWSGSEWLTNRLPPQWATRAGPLRILLIGILLQVILLTRSQGLLPE CCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC RPPKPVLGTSPSPKQNPAG CCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLSYGIFFLILVGIYGVLVLGLNIQWGYAGMFNIGVGAFFAVGAYASAIVTTPPSAEHLG CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHCC GFNLPFWVGFAIAVAVAGAIAFLIGLITLKLRSDYLAIATIGIAEIISQILRNEGWLTNG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC VRGITRIPRPFRGWIPGQDTLLYLGLVLVILAVVYWAAERAYRSPWGRVLRAIREDEPAT CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCH LAAGKDVLQFRLQAFVLGSMLMGLAGALYAHFVNFISPEAFQPEFATFIVWVMLIAGGSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC NNRGALLGALVIWGVWSGSEWLTNRLPPQWATRAGPLRILLIGILLQVILLTRSQGLLPE CCCHHHHHHHHHHHCCCCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC RPPKPVLGTSPSPKQNPAG CCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]