| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609526
Identifier: 86609526
GI number: 86609526
Start: 2174263
End: 2175306
Strand: Reverse
Name: 86609526
Synonym: CYB_2078
Alternate gene names: NA
Gene position: 2175306-2174263 (Counterclockwise)
Preceding gene: 86609527
Following gene: 86609525
Centisome position: 71.4
GC content: 61.69
Gene sequence:
>1044_bases ATGCGCATTTCCATCCAGCCGGGGAGTGGGATCCCTGGCTCCGTGCAGCTCTTTAATTTGCTCTGCTTCGCCATCGCCTG TGGGCAGTTTCCTCCCGGCTGCCGCCTGCCCAGCACCCGTCAATTGGCCATGCAAACGGGCCTGCATCGCAACACCATCC ACAAGGTTTACCGCCAATTGGAGGCCATGGGCCTGGTGGAAACCCGCGCTGGATCTGGCATTTACGTGAGCCGCTCCGCC CGCCAGGTGGTTAACTACTCTCGCGGCCTGGGGGAAAACCTGGATCGATCCCGACAGGTCCTGGAGCAGGTGCGCCAGGG CATCGACCAGCTGCTGCAGCAGGGGTTTTCTTTGGAGCAGGTGCGGGATCTGCTGCTAGCGGAGATCGATTGGCGATTGC GCTGCAGTGCCCAAGTGCTGGTGTGTGTGCCCAACCGGGATTTGGGTACAGGACAACTGATGGCCCAGCAAATCCAGCAG ACTTTGGGCATCCGGGTCCAGTTGGTGCCCCTGGAGGAGCTGGCCACCGTTCTGGATCAGATCCATTCCGGCACTGTGGT GACGCTGCACTATTTTCTCAGCGCCGTCGAGGCCATTGCCCAACCCCGGGGGGCCCGTGTTCTGACGGTGGAGGTGTCTG ACTACGCCCGCGAAATTGCCCTGATCCGCCAATTGCCTTCCTACGCCTGTCTGGGGCTGGTGAGCATCAGCACTGCCCTG CTGGAAGTTGCCGAGGTGATCGTCCACAGTTTGCGGGGAGACCTGCTGGTGCTGACGGCAGTGATCTCGGATACGGAACG GGTGGGATCCCTAATCCGCCGCGCCCATACGCTGATTTGCGATGAGGCCAGCTACCCCACCCTGCGGGTCTTGGTGCGCC AAGCCCGAGCCGATCTAATCCGCACACCCAACCTAGTCTGCGCCACCCCCCACATCGGAGAAGCAGCCATGGCCGAGCTG AGACGGGAATTGGGTGGGATCCCTGGAGCCGGAGGGGATAGAGAGGCGGGCGGCAGCGATTTGCAGAGTAAAGAAACGCA TTAA
Upstream 100 bases:
>100_bases GCAGGCAGTTGACACTCCCGCCGACTGAAGTCGAGGGATTCTTACGTAGCCCAGAAACGGGCTCGCAACGGCGTTGTCAA AGGGAGAAAAACGGGCCATG
Downstream 100 bases:
>100_bases GCCTTGTTGCAGGTGAGCCATTTTGCGGATGACAGGCTGCCCAAGATCGTGCTTAAGTGAAAATACGGTAAAAGCTCTCT CATTTTGATTCATCGCTGAT
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator GntR Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcriptional Regulatory Protein; GntR Family Transcriptional Repressor
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MRISIQPGSGIPGSVQLFNLLCFAIACGQFPPGCRLPSTRQLAMQTGLHRNTIHKVYRQLEAMGLVETRAGSGIYVSRSA RQVVNYSRGLGENLDRSRQVLEQVRQGIDQLLQQGFSLEQVRDLLLAEIDWRLRCSAQVLVCVPNRDLGTGQLMAQQIQQ TLGIRVQLVPLEELATVLDQIHSGTVVTLHYFLSAVEAIAQPRGARVLTVEVSDYAREIALIRQLPSYACLGLVSISTAL LEVAEVIVHSLRGDLLVLTAVISDTERVGSLIRRAHTLICDEASYPTLRVLVRQARADLIRTPNLVCATPHIGEAAMAEL RRELGGIPGAGGDREAGGSDLQSKETH
Sequences:
>Translated_347_residues MRISIQPGSGIPGSVQLFNLLCFAIACGQFPPGCRLPSTRQLAMQTGLHRNTIHKVYRQLEAMGLVETRAGSGIYVSRSA RQVVNYSRGLGENLDRSRQVLEQVRQGIDQLLQQGFSLEQVRDLLLAEIDWRLRCSAQVLVCVPNRDLGTGQLMAQQIQQ TLGIRVQLVPLEELATVLDQIHSGTVVTLHYFLSAVEAIAQPRGARVLTVEVSDYAREIALIRQLPSYACLGLVSISTAL LEVAEVIVHSLRGDLLVLTAVISDTERVGSLIRRAHTLICDEASYPTLRVLVRQARADLIRTPNLVCATPHIGEAAMAEL RRELGGIPGAGGDREAGGSDLQSKETH >Mature_347_residues MRISIQPGSGIPGSVQLFNLLCFAIACGQFPPGCRLPSTRQLAMQTGLHRNTIHKVYRQLEAMGLVETRAGSGIYVSRSA RQVVNYSRGLGENLDRSRQVLEQVRQGIDQLLQQGFSLEQVRDLLLAEIDWRLRCSAQVLVCVPNRDLGTGQLMAQQIQQ TLGIRVQLVPLEELATVLDQIHSGTVVTLHYFLSAVEAIAQPRGARVLTVEVSDYAREIALIRQLPSYACLGLVSISTAL LEVAEVIVHSLRGDLLVLTAVISDTERVGSLIRRAHTLICDEASYPTLRVLVRQARADLIRTPNLVCATPHIGEAAMAEL RRELGGIPGAGGDREAGGSDLQSKETH
Specific function: Unknown
COG id: COG1725
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37876; Mature: 37876
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRISIQPGSGIPGSVQLFNLLCFAIACGQFPPGCRLPSTRQLAMQTGLHRNTIHKVYRQL CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH EAMGLVETRAGSGIYVSRSARQVVNYSRGLGENLDRSRQVLEQVRQGIDQLLQQGFSLEQ HHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH VRDLLLAEIDWRLRCSAQVLVCVPNRDLGTGQLMAQQIQQTLGIRVQLVPLEELATVLDQ HHHHHHHHCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHH IHSGTVVTLHYFLSAVEAIAQPRGARVLTVEVSDYAREIALIRQLPSYACLGLVSISTAL HCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHHH LEVAEVIVHSLRGDLLVLTAVISDTERVGSLIRRAHTLICDEASYPTLRVLVRQARADLI HHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH RTPNLVCATPHIGEAAMAELRRELGGIPGAGGDREAGGSDLQSKETH CCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRISIQPGSGIPGSVQLFNLLCFAIACGQFPPGCRLPSTRQLAMQTGLHRNTIHKVYRQL CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH EAMGLVETRAGSGIYVSRSARQVVNYSRGLGENLDRSRQVLEQVRQGIDQLLQQGFSLEQ HHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH VRDLLLAEIDWRLRCSAQVLVCVPNRDLGTGQLMAQQIQQTLGIRVQLVPLEELATVLDQ HHHHHHHHCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHH IHSGTVVTLHYFLSAVEAIAQPRGARVLTVEVSDYAREIALIRQLPSYACLGLVSISTAL HCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHHH LEVAEVIVHSLRGDLLVLTAVISDTERVGSLIRRAHTLICDEASYPTLRVLVRQARADLI HHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH RTPNLVCATPHIGEAAMAELRRELGGIPGAGGDREAGGSDLQSKETH CCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA