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The map label for this gene is rpe [H]

Identifier: 86609495

GI number: 86609495

Start: 2148516

End: 2149226

Strand: Reverse

Name: rpe [H]

Synonym: CYB_2047

Alternate gene names: 86609495

Gene position: 2149226-2148516 (Counterclockwise)

Preceding gene: 86609497

Following gene: 86609493

Centisome position: 70.54

GC content: 59.49

Gene sequence:

>711_bases
ATGGTGCAGCCGTCAGCGACCTCTGGGCAAAAGCCGATTGTGATCGCCCCTTCCATCCTTTCAGCCGATTTCAGCCGGTT
GGGGGAGGAAGTACGGGCAGTGGATGAGGCGGGGGCCGACTGGATCCATGTGGATGTGATGGATGGCCGCTTTGTGCCCA
ACATCACCATCGGCCCGTTGGTGGTGGAAGCCCTGCGCCCGGTGACGGCCAAGCCCCTGGACGTCCACCTGATGATTGTA
GAGCCGGAGAACTATGTGGCGGATTTTGCCAAGGCAGGGGCCGACATTATTTCCGTGCACGCAGAGTCCAGCTCCACCAT
TCACCTGCACCGCACCCTCAGCCAAATCAAGGATCTGGGCAAGCAAGCGGGCGTGGTGCTCAATCCGGCCAGCCCTTTGG
AGCTGATCCAATACGTGCTGGATCTGGTGGATCTGGTGTTGATCATGAGTGTCAACCCCGGATTTGGCGGGCAAAGCTTC
ATTCCGGCAGTGGTGCCCAAAATTCGCCAGTTGCGGGCCATGTGCGATGAGCGGGGCCTGGATCCCTGGATCGAGGTGGA
TGGCGGCATCAAAGCCAGCAACGCTTGGCAGGTGATTGAAGCAGGAGCCAACGCCATTGTGGCCGGTTCGGCAGTGTTCA
AAGCCAAAGACTATGCCGAAGCCATTCGCAGCATTCGCAACAGCCGCCGTCCCGAGCTGGTGACAGTTTGA

Upstream 100 bases:

>100_bases
AAGCTGAGAGGGGATATGACGCTTTGCAAAGGGGATCAAACCCCGTACCATAGAGGAGCAGGTTTCTCCGTTTCTCTGTT
TTCAATCCCCAGGACTCACC

Downstream 100 bases:

>100_bases
TTTGAAGGAAATTGCTCCCTTCTAAAATCCAGCTTGGCCCTGGCGCTTTGCGCCGCTGACTTAATCTGGCCCCCCACTCC
CGGCTCTTCGTCCACAGAGG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MVQPSATSGQKPIVIAPSILSADFSRLGEEVRAVDEAGADWIHVDVMDGRFVPNITIGPLVVEALRPVTAKPLDVHLMIV
EPENYVADFAKAGADIISVHAESSSTIHLHRTLSQIKDLGKQAGVVLNPASPLELIQYVLDLVDLVLIMSVNPGFGGQSF
IPAVVPKIRQLRAMCDERGLDPWIEVDGGIKASNAWQVIEAGANAIVAGSAVFKAKDYAEAIRSIRNSRRPELVTV

Sequences:

>Translated_236_residues
MVQPSATSGQKPIVIAPSILSADFSRLGEEVRAVDEAGADWIHVDVMDGRFVPNITIGPLVVEALRPVTAKPLDVHLMIV
EPENYVADFAKAGADIISVHAESSSTIHLHRTLSQIKDLGKQAGVVLNPASPLELIQYVLDLVDLVLIMSVNPGFGGQSF
IPAVVPKIRQLRAMCDERGLDPWIEVDGGIKASNAWQVIEAGANAIVAGSAVFKAKDYAEAIRSIRNSRRPELVTV
>Mature_236_residues
MVQPSATSGQKPIVIAPSILSADFSRLGEEVRAVDEAGADWIHVDVMDGRFVPNITIGPLVVEALRPVTAKPLDVHLMIV
EPENYVADFAKAGADIISVHAESSSTIHLHRTLSQIKDLGKQAGVVLNPASPLELIQYVLDLVDLVLIMSVNPGFGGQSF
IPAVVPKIRQLRAMCDERGLDPWIEVDGGIKASNAWQVIEAGANAIVAGSAVFKAKDYAEAIRSIRNSRRPELVTV

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=215, Percent_Identity=39.5348837209302, Blast_Score=154, Evalue=5e-38,
Organism=Homo sapiens, GI219879828, Length=215, Percent_Identity=37.2093023255814, Blast_Score=144, Evalue=7e-35,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=31.9526627218935, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=52.5114155251142, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=36.5482233502538, Blast_Score=166, Evalue=8e-43,
Organism=Escherichia coli, GI1790754, Length=206, Percent_Identity=33.9805825242718, Blast_Score=113, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17552948, Length=217, Percent_Identity=40.5529953917051, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6322341, Length=237, Percent_Identity=40.084388185654, Blast_Score=167, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24586301, Length=214, Percent_Identity=37.8504672897196, Blast_Score=154, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 25329; Mature: 25329

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQPSATSGQKPIVIAPSILSADFSRLGEEVRAVDEAGADWIHVDVMDGRFVPNITIGPL
CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCHHHH
VVEALRPVTAKPLDVHLMIVEPENYVADFAKAGADIISVHAESSSTIHLHRTLSQIKDLG
HHHHHCCCCCCCEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHHHHHHH
KQAGVVLNPASPLELIQYVLDLVDLVLIMSVNPGFGGQSFIPAVVPKIRQLRAMCDERGL
HHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
DPWIEVDGGIKASNAWQVIEAGANAIVAGSAVFKAKDYAEAIRSIRNSRRPELVTV
CCEEEECCCEECCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MVQPSATSGQKPIVIAPSILSADFSRLGEEVRAVDEAGADWIHVDVMDGRFVPNITIGPL
CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCHHHH
VVEALRPVTAKPLDVHLMIVEPENYVADFAKAGADIISVHAESSSTIHLHRTLSQIKDLG
HHHHHCCCCCCCEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCEEHHHHHHHHHHHHH
KQAGVVLNPASPLELIQYVLDLVDLVLIMSVNPGFGGQSFIPAVVPKIRQLRAMCDERGL
HHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
DPWIEVDGGIKASNAWQVIEAGANAIVAGSAVFKAKDYAEAIRSIRNSRRPELVTV
CCEEEECCCEECCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]