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The map label for this gene is ydcM [C]

Identifier: 86609475

GI number: 86609475

Start: 2128027

End: 2129220

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_2026

Alternate gene names: 86609475

Gene position: 2129220-2128027 (Counterclockwise)

Preceding gene: 86609476

Following gene: 86609472

Centisome position: 69.89

GC content: 54.1

Gene sequence:

>1194_bases
ATGACCCAAGCCCTGACTGTAGCTTGCAAGCTCAAGGTGTCCCAGTCGCAGGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAATCTGGCCCAGCAGGTCTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGATGCACGTATCTTCTCGTTTCG
CGAGAAAGACTGGACAGTGTCGCTTGCCACGGTTGATGGAAGAGAACGCTTTGAGCTAGCCATTGGCAACTACCAGAGGG
GAATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCGCAAAGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGATTTGGGAAGGATAGATATCGCTCATACCTC
AGAGGGGAAGAACTGGAATGGACAGCAGTTAAACAAGGTACGAGACCACTACTCCAAGCTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAAGCTTGGGTGAACCACAGTATCGCTAAGAGCATCGTTAAAACAGCAAAATCTCTTTCTGCCTGCATTGCAATTGAGGA
CTTAAGCGGCATTCGAGAACGCACCAATCAACACCCCCGCAGTCGTGAGGAGCGGCGGCGTAGCAATAGCTGGGCGTTCT
ACCAGCTGCGGCGGTTTATCGAATACAAGGCTGTGAGGGCGGGTGTCAAAGTGGTAGCTGTCCCTGCGGCCTATACCTCG
CAGATCTGCCACAAGTGCCTGCATATTCATCCCGACTCCGCTCAATCCTATCGCAAGGGTAAGCAGTTCAAATGCGGGCA
CTGCGGTTGGGAAGGGGATGCGGATTTTAACGGTGCGAAGGTGATTGCGCTTTTGGGGGCTGCTGTAAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTACCAAAAGCCCGCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
TTAGTGGCTAGTGACTAGTGGCTAGTCACTACCCACTCACCACTATCCAGGGTCAGTGCCGAGAGGAATGCGGCCTTCCT
TGATGAAGTACAATCGGCGC

Downstream 100 bases:

>100_bases
TTTACGACTTGAGCATCTTGGCCGGCATGACAATGAGGGTATTCCCCTGTCGCTCCACCACGTAGAGCTCCTGTCCGGCT
TGGATTTCTAGGTTGGGAAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQALTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHSIAKSIVKTAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSWLACQLQGYQKPALYCEAVRVG

Sequences:

>Translated_397_residues
MTQALTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHSIAKSIVKTAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSWLACQLQGYQKPALYCEAVRVG
>Mature_396_residues
TQALTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHSIAKSIVKTAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTSQ
ICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSWLACQLQGYQKPALYCEAVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=231, Percent_Identity=29.4372294372294, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45022; Mature: 44891

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQALTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CHHEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEECE
IDIAHTSEGKNWNGQQLNKVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHSIAKSIVKTAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHH
VIALLGAAVNQPRGSWLACQLQGYQKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHEEEECC
>Mature Secondary Structure 
TQALTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CHHEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEECE
IDIAHTSEGKNWNGQQLNKVRDHYSKLRAALQRKASKGTRSSRRRCRELLQRLSGKERRF
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHSIAKSIVKTAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHH
VIALLGAAVNQPRGSWLACQLQGYQKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]