| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609438
Identifier: 86609438
GI number: 86609438
Start: 2093238
End: 2094686
Strand: Reverse
Name: 86609438
Synonym: CYB_1989
Alternate gene names: NA
Gene position: 2094686-2093238 (Counterclockwise)
Preceding gene: 86609439
Following gene: 86609437
Centisome position: 68.75
GC content: 50.93
Gene sequence:
>1449_bases ATGAAGGATCGTCCTCTGCCTCCACTTCTGCTGGCAATCATGATTTTTAATTTCTTCATTCTCTTTGGCTGTAGTGTTGT CCGGCATCACCTGTTTCAGTCTGGAGGATATGATCTTGGCATCTTCGACCAATCCATCTATCTAATCAGTCGGGGAGAGG TCCCGTTTTCGACCATTCGAGGGATCCACATCTTGGGAGACCACGCAGCCTTTATTCTCTATCCCATCAGCTTTTTGTAC CGCATTGTCCCCTCGGTCTATTGGCTGTTTGGGCTCCAATCCCTGGCGTTAACCTTGGGAGCATTGGCTATTTATCACCT TGCACTTCAGGCCAAGGTCGATCCCAGCCAAGTGATGGTGATTGCCACAGCCTATCTTCTCTATCCGGCCATTTTTAACG CCAACCTTTTTGATTTTCATCCAGAGGTTTTGGCCGTTCCCCTTTTCTTGGCGGCTGTGCTCTGCATTCGCTCTGGAAAA TTGAGGGGGTTCCTTCTCTGTTTGAGCGGCATTCTTGGCTGTAAGGCGGTGTTATCTCTCAATGTTGTTGCTCTGGGAGT CTGGCTGTTGTTTTGGGAAAAAGGACGAATTCAAGAACGCTGGCAACAGCGCTGCCAAGTGGGCGGCTGGACGGCAATTG CGGCAGGATCAGCTTGGTTTGGGATAGCCACTTTTGGGGTCATTCCTCACTTCAGCGGCAGCGAGCCGGCAGCCGTTTCT CATTACGACTATCTAGGGAATTCTGTTGCGGAAATTGTTCAAGGTTTAATCTTGAGACCGATGCTGGTTTTGAGCAAAGT CTTCTCCCTGGACACCCTGCTTTATGGAGTTTTGTTGGTCGTGCCTTTGGCTTGGGGTCTCTCTTGGCGGCATTGGGATC CCTGGATCCCTGCCCTGCCTACCCTGGGTTTGAATATACTCTCCAGCAACCCCGCCTATCGGGATCTGGTACATCAATAC GCTTTGCCTATCGTTCCTTTCTTGTTCTTGGCCGTCATCGAGAATGTGAAAAACCATCCCTTGCAGAGCCATTTTATAAA AGATGGAAAACTGCCCCTGATCTGGTCTTCGCTGGCCTTTTTGGCCTTGGGGAAATACACCTTTTTCGGCTCGATTTATC TCAGCTCCCTGGACACTTGGCAGGCAACCCGACAGGCTCTTGCCCAGATCACCACCCAAGGGGGCGTCCTCACCACCCAC GAGATCAGCCCTCACCTCACCCAGCGACCTGTAATCTACTTTACAGACGAGGGCCGCTTCAATGGATCCCCGCCCTCTCA GTGGGATCCCTTTGATTATGTGTTGCTCAACACCCGTCATCCGGGGTGGCGCAGCACTCCAGAGTTCTCCCGTGTCCTGA TTGAAGCTTTACAGAAGGAAACTCAATTCCAGCTTCTGTACCACCAAGATGGGGTGTATTTGTTCTCTAGGTTACGAAAA GACCTCTAA
Upstream 100 bases:
>100_bases AGCCTCTGCCGAATCCAGATCTCGCTAGGATGTCACGCAAGGCTGAGAAAAGCGATAAAGTTACCTTGCCAAAATCTATA AATCAAAAGCCCTAGTTCTT
Downstream 100 bases:
>100_bases GAATCGCATAAGAATCGCAATTCTAAGGACTGCAGACTACTTTATTGGCACTTGATCTAATTGACTTAAACCAAGTCTTC TTCTCGTTGCAACAAATGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MKDRPLPPLLLAIMIFNFFILFGCSVVRHHLFQSGGYDLGIFDQSIYLISRGEVPFSTIRGIHILGDHAAFILYPISFLY RIVPSVYWLFGLQSLALTLGALAIYHLALQAKVDPSQVMVIATAYLLYPAIFNANLFDFHPEVLAVPLFLAAVLCIRSGK LRGFLLCLSGILGCKAVLSLNVVALGVWLLFWEKGRIQERWQQRCQVGGWTAIAAGSAWFGIATFGVIPHFSGSEPAAVS HYDYLGNSVAEIVQGLILRPMLVLSKVFSLDTLLYGVLLVVPLAWGLSWRHWDPWIPALPTLGLNILSSNPAYRDLVHQY ALPIVPFLFLAVIENVKNHPLQSHFIKDGKLPLIWSSLAFLALGKYTFFGSIYLSSLDTWQATRQALAQITTQGGVLTTH EISPHLTQRPVIYFTDEGRFNGSPPSQWDPFDYVLLNTRHPGWRSTPEFSRVLIEALQKETQFQLLYHQDGVYLFSRLRK DL
Sequences:
>Translated_482_residues MKDRPLPPLLLAIMIFNFFILFGCSVVRHHLFQSGGYDLGIFDQSIYLISRGEVPFSTIRGIHILGDHAAFILYPISFLY RIVPSVYWLFGLQSLALTLGALAIYHLALQAKVDPSQVMVIATAYLLYPAIFNANLFDFHPEVLAVPLFLAAVLCIRSGK LRGFLLCLSGILGCKAVLSLNVVALGVWLLFWEKGRIQERWQQRCQVGGWTAIAAGSAWFGIATFGVIPHFSGSEPAAVS HYDYLGNSVAEIVQGLILRPMLVLSKVFSLDTLLYGVLLVVPLAWGLSWRHWDPWIPALPTLGLNILSSNPAYRDLVHQY ALPIVPFLFLAVIENVKNHPLQSHFIKDGKLPLIWSSLAFLALGKYTFFGSIYLSSLDTWQATRQALAQITTQGGVLTTH EISPHLTQRPVIYFTDEGRFNGSPPSQWDPFDYVLLNTRHPGWRSTPEFSRVLIEALQKETQFQLLYHQDGVYLFSRLRK DL >Mature_482_residues MKDRPLPPLLLAIMIFNFFILFGCSVVRHHLFQSGGYDLGIFDQSIYLISRGEVPFSTIRGIHILGDHAAFILYPISFLY RIVPSVYWLFGLQSLALTLGALAIYHLALQAKVDPSQVMVIATAYLLYPAIFNANLFDFHPEVLAVPLFLAAVLCIRSGK LRGFLLCLSGILGCKAVLSLNVVALGVWLLFWEKGRIQERWQQRCQVGGWTAIAAGSAWFGIATFGVIPHFSGSEPAAVS HYDYLGNSVAEIVQGLILRPMLVLSKVFSLDTLLYGVLLVVPLAWGLSWRHWDPWIPALPTLGLNILSSNPAYRDLVHQY ALPIVPFLFLAVIENVKNHPLQSHFIKDGKLPLIWSSLAFLALGKYTFFGSIYLSSLDTWQATRQALAQITTQGGVLTTH EISPHLTQRPVIYFTDEGRFNGSPPSQWDPFDYVLLNTRHPGWRSTPEFSRVLIEALQKETQFQLLYHQDGVYLFSRLRK DL
Specific function: Unknown
COG id: COG3463
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54140; Mature: 54140
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDRPLPPLLLAIMIFNFFILFGCSVVRHHLFQSGGYDLGIFDQSIYLISRGEVPFSTIR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCHHHHC GIHILGDHAAFILYPISFLYRIVPSVYWLFGLQSLALTLGALAIYHLALQAKVDPSQVMV CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH IATAYLLYPAIFNANLFDFHPEVLAVPLFLAAVLCIRSGKLRGFLLCLSGILGCKAVLSL HHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH NVVALGVWLLFWEKGRIQERWQQRCQVGGWTAIAAGSAWFGIATFGVIPHFSGSEPAAVS HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHH HYDYLGNSVAEIVQGLILRPMLVLSKVFSLDTLLYGVLLVVPLAWGLSWRHWDPWIPALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH TLGLNILSSNPAYRDLVHQYALPIVPFLFLAVIENVKNHPLQSHFIKDGKLPLIWSSLAF HCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHH LALGKYTFFGSIYLSSLDTWQATRQALAQITTQGGVLTTHEISPHLTQRPVIYFTDEGRF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCC NGSPPSQWDPFDYVLLNTRHPGWRSTPEFSRVLIEALQKETQFQLLYHQDGVYLFSRLRK CCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHH DL CC >Mature Secondary Structure MKDRPLPPLLLAIMIFNFFILFGCSVVRHHLFQSGGYDLGIFDQSIYLISRGEVPFSTIR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCHHHHC GIHILGDHAAFILYPISFLYRIVPSVYWLFGLQSLALTLGALAIYHLALQAKVDPSQVMV CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH IATAYLLYPAIFNANLFDFHPEVLAVPLFLAAVLCIRSGKLRGFLLCLSGILGCKAVLSL HHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH NVVALGVWLLFWEKGRIQERWQQRCQVGGWTAIAAGSAWFGIATFGVIPHFSGSEPAAVS HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHH HYDYLGNSVAEIVQGLILRPMLVLSKVFSLDTLLYGVLLVVPLAWGLSWRHWDPWIPALP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH TLGLNILSSNPAYRDLVHQYALPIVPFLFLAVIENVKNHPLQSHFIKDGKLPLIWSSLAF HCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHH LALGKYTFFGSIYLSSLDTWQATRQALAQITTQGGVLTTHEISPHLTQRPVIYFTDEGRF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCC NGSPPSQWDPFDYVLLNTRHPGWRSTPEFSRVLIEALQKETQFQLLYHQDGVYLFSRLRK CCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHH DL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA