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The map label for this gene is degT [H]

Identifier: 86609429

GI number: 86609429

Start: 2079056

End: 2080213

Strand: Reverse

Name: degT [H]

Synonym: CYB_1979

Alternate gene names: 86609429

Gene position: 2080213-2079056 (Counterclockwise)

Preceding gene: 86609431

Following gene: 86609426

Centisome position: 68.28

GC content: 63.99

Gene sequence:

>1158_bases
ATGACGGAGGAGCCGATTCCGCTGCTGGATTTGACGGGGCAGTACCGCGCTTTGGCCGGGCTGTTGCAGCCGCAGCTGGA
AGCGCTGCTGGCCTCTGGCCAGTACATCGGCGGGGCGGCGGTGCAGCGCTTTGAGGAGCAGTTTGCCCAGTTTTTGGGGG
GTGGCCCCCTGGAGGCCGTCGGCTGCAATTCCGGCACCGATGCCTTGGTGTTGGCTTTGCAGGCTTTGGGCATCCAGGCG
GGGGATGAGGTGCTCACCAGTGCCTTTAGTTTTTTTGCCTCGGCTGCCGCCATCAGCCGGGTGGGGGCGCGTCCGGTGTT
TGTGGATGTGGATCCGTGCACCTTTAACCTGGATCCGCAGCTGCTGGAAAGGAGCATCTCCTGCCGCACCAAGGCGGTGG
TGGTGGTGCATTTGTTTGGGCAGGCGGCCAACATGACCCAGATTCTGGCTATTGCCCGGCGGCACGGCTTGGCGGTGGTG
GAAGATTGTGCCCAGGCGGTGGGGGCCTGCTGGGGGGGCAGGCCGGTGGGCACGTGGGGAGAGGTGGGCTGCTTCAGCTT
TTTTCCCACCAAGAATCTGGGTGCGGCTGGGGATGGGGGGGCGGTGGTGACGCGGGATCCCCAACTGGCCAGGCGGGTGC
GGGCTCTCAGGGAGCATGGGCAGACCCGTCCGTACCACCACGAGCATTTGGGTCTCAACAGCCGTTTGGATGCGCTGCAG
GCGGTGATTCTCTCGGTGAAGTTGCCTTATCTGCGGGAGTGGAACTGGCGGCGGCAGGGGATTGCGGAGTGTTACCACCG
CTTGCTGCAAGGGATCCCGGGCTTGATGTTGCCCCAGGTGGGGGTGGGGGGGAACTCGGTGTGGCACCAGTACACGGTGC
GGGTGGTGGGTTCTGAGGCGACGGATGGGCGGCGGCGGGACTATTTGCAGCAGGGTCTGAAGGAGCGGGGCATTGGCAGT
CGGGTTTACTATCCTCTGCCATTGCCGCTGCAGCCGGTGTACCGAGGGCTGGGCTACCGGCGGGGGGATCTGCCCAATGC
CGAGCTATGTGCGGCTCAGGTGTTGTCTTTGCCGTGTTTTCCTGAGTTGACCACCTGTCAACAAGAGCGGGTGGCTGCGG
CCATTGCTGAAATCCTCTCAGAAAAAACCTGCCCGTAG

Upstream 100 bases:

>100_bases
GAAGACAAACCCCAGAACCCTTCTGGCCCAGAGCGTTGTGTACACAGGCTCTCATCCGCGATGATGGGCTGTGGCCGCCA
CCTTCTCCAAAGGCAGCACC

Downstream 100 bases:

>100_bases
CACTCAGTTATGTCTGCCTTATGGTCATTTCGATTCAAACTAGAACACTGCACCCACGCCCACAGTCATTTTAAATAAGA
ATGAAACGAAATGAAACATT

Product: DegT/DnrJ/EryC1/StrS aminotransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTEEPIPLLDLTGQYRALAGLLQPQLEALLASGQYIGGAAVQRFEEQFAQFLGGGPLEAVGCNSGTDALVLALQALGIQA
GDEVLTSAFSFFASAAAISRVGARPVFVDVDPCTFNLDPQLLERSISCRTKAVVVVHLFGQAANMTQILAIARRHGLAVV
EDCAQAVGACWGGRPVGTWGEVGCFSFFPTKNLGAAGDGGAVVTRDPQLARRVRALREHGQTRPYHHEHLGLNSRLDALQ
AVILSVKLPYLREWNWRRQGIAECYHRLLQGIPGLMLPQVGVGGNSVWHQYTVRVVGSEATDGRRRDYLQQGLKERGIGS
RVYYPLPLPLQPVYRGLGYRRGDLPNAELCAAQVLSLPCFPELTTCQQERVAAAIAEILSEKTCP

Sequences:

>Translated_385_residues
MTEEPIPLLDLTGQYRALAGLLQPQLEALLASGQYIGGAAVQRFEEQFAQFLGGGPLEAVGCNSGTDALVLALQALGIQA
GDEVLTSAFSFFASAAAISRVGARPVFVDVDPCTFNLDPQLLERSISCRTKAVVVVHLFGQAANMTQILAIARRHGLAVV
EDCAQAVGACWGGRPVGTWGEVGCFSFFPTKNLGAAGDGGAVVTRDPQLARRVRALREHGQTRPYHHEHLGLNSRLDALQ
AVILSVKLPYLREWNWRRQGIAECYHRLLQGIPGLMLPQVGVGGNSVWHQYTVRVVGSEATDGRRRDYLQQGLKERGIGS
RVYYPLPLPLQPVYRGLGYRRGDLPNAELCAAQVLSLPCFPELTTCQQERVAAAIAEILSEKTCP
>Mature_384_residues
TEEPIPLLDLTGQYRALAGLLQPQLEALLASGQYIGGAAVQRFEEQFAQFLGGGPLEAVGCNSGTDALVLALQALGIQAG
DEVLTSAFSFFASAAAISRVGARPVFVDVDPCTFNLDPQLLERSISCRTKAVVVVHLFGQAANMTQILAIARRHGLAVVE
DCAQAVGACWGGRPVGTWGEVGCFSFFPTKNLGAAGDGGAVVTRDPQLARRVRALREHGQTRPYHHEHLGLNSRLDALQA
VILSVKLPYLREWNWRRQGIAECYHRLLQGIPGLMLPQVGVGGNSVWHQYTVRVVGSEATDGRRRDYLQQGLKERGIGSR
VYYPLPLPLQPVYRGLGYRRGDLPNAELCAAQVLSLPCFPELTTCQQERVAAAIAEILSEKTCP

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=365, Percent_Identity=35.3424657534247, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI2367285, Length=368, Percent_Identity=31.5217391304348, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41679; Mature: 41548

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEEPIPLLDLTGQYRALAGLLQPQLEALLASGQYIGGAAVQRFEEQFAQFLGGGPLEAV
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
GCNSGTDALVLALQALGIQAGDEVLTSAFSFFASAAAISRVGARPVFVDVDPCTFNLDPQ
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCCHH
LLERSISCRTKAVVVVHLFGQAANMTQILAIARRHGLAVVEDCAQAVGACWGGRPVGTWG
HHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
EVGCFSFFPTKNLGAAGDGGAVVTRDPQLARRVRALREHGQTRPYHHEHLGLNSRLDALQ
CCCCEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHH
AVILSVKLPYLREWNWRRQGIAECYHRLLQGIPGLMLPQVGVGGNSVWHQYTVRVVGSEA
HHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEEEEECCCC
TDGRRRDYLQQGLKERGIGSRVYYPLPLPLQPVYRGLGYRRGDLPNAELCAAQVLSLPCF
CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PELTTCQQERVAAAIAEILSEKTCP
CCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEEPIPLLDLTGQYRALAGLLQPQLEALLASGQYIGGAAVQRFEEQFAQFLGGGPLEAV
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
GCNSGTDALVLALQALGIQAGDEVLTSAFSFFASAAAISRVGARPVFVDVDPCTFNLDPQ
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCCHH
LLERSISCRTKAVVVVHLFGQAANMTQILAIARRHGLAVVEDCAQAVGACWGGRPVGTWG
HHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
EVGCFSFFPTKNLGAAGDGGAVVTRDPQLARRVRALREHGQTRPYHHEHLGLNSRLDALQ
CCCCEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHH
AVILSVKLPYLREWNWRRQGIAECYHRLLQGIPGLMLPQVGVGGNSVWHQYTVRVVGSEA
HHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEEEEECCCC
TDGRRRDYLQQGLKERGIGSRVYYPLPLPLQPVYRGLGYRRGDLPNAELCAAQVLSLPCF
CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
PELTTCQQERVAAAIAEILSEKTCP
CCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]