| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is ychM [C]
Identifier: 86609380
GI number: 86609380
Start: 2008418
End: 2010232
Strand: Reverse
Name: ychM [C]
Synonym: CYB_1923
Alternate gene names: 86609380
Gene position: 2010232-2008418 (Counterclockwise)
Preceding gene: 86609381
Following gene: 86609378
Centisome position: 65.98
GC content: 61.65
Gene sequence:
>1815_bases ATGAGTGGGATCCCTTCTACTTCCTCTGGGGGGCAAGGGATCCTGGCGCGGTACCTGCCCTTTGCTAAGGAGTCCCTTTG GGTCTTCCACTATCAACGATCAGATTTGCCGGGAGATCTGATCGCCGGCCTTGTGGTGGCCATTCTGTTGGTGCCCCAGA GCATGGCCTATGCCCTGTTGGCCGGGTTGCCCCCCCAAGTGGGCCTGTACGCCAGTATTTTGCCGGTGATCGTCTATGGA CTACTGGGATCCAGCCGCGCCTTGGCGGTAGGGCCAGTGGCCATCATCTCCCTCTTGGTGGCGGCAGGGTTAGAGCCGCT GGCCGGTCGCGTCAGCGGGACGGAGTCCTTGCCGGGCAGCCCGGAGTATGGACAGTTGGCTTTGGGGCTGGCCTTGGAGG TGGGTCTGGTCCAGGGGGCCATGGGGTTGTTGCGGCTGGGGTTTTTGGCCAATTTCTTAAGCCACACGGTGGTGACTGCC TTTGGCAGCGCGGCGGCCTTGATCATCGGCTTCAGCCAGCTCCGCCACCTCCTGGGGGTCAAGATCGCCAATACGGAGTC CTTCTTGCTGTTGGTGCAGCGGCTGTGGCAAAGCCTGGACAAGGTGAACTGGGCAACCTTTGGCCTAGGGCTGCTGGCCG TATCCCTGCTGGTGTACGCTCAGCGAAAGTTGCCCCACCAACTGCGGCGTTGGGGTGTGCCTCCAGGTTGGGCCTTGATT TTGACCAAGGGGGCACCGCTAGCGGCTGTGCTCGTGACCAGCCTGTTGGTCTGGGGCCTAAACCTCTCGGAGAGGGCAGG GGTATCCGTTGTTGGCTCCATTCCTTCCGGGTTGCCCCCCTTGGGCTTTCCCTCGTTGAGCTGGGGACAGTGGACAGCGC TTCTGCCCACCGCCTTGGCCATCAGCTTGGTGGGCTTCACGGAAAGCTATGCTGTGGGGCAGTCCTTGGCCAGCCAGCGG CGGCAGAAGGTGGATCCCAACCAAGATCTGGTGGCTTTGGGGGCAGCCAACTTGGCAGCAGCTTGCAGTGGCGGCTATCC GGTAACGGGAGGCATCAGCCGGTCGGTGGTGAACTTTCAAGCAGGCGCCAACAGTGGCCTGGCCTCCCTAATCACCGGCC TGTTGGTGGCTTTGACGGTCATCTGGCTGATGCCACTGTTCACCTTCTTGCCCCAGACCACCCTGGCGGCCATCGTTCTG GTGGCGGTGCTGGCCCTGGTGGATTTTCACCCCCTGCTGCAAAGCTGGCGCTACGACCGCGGCGATGCCCTGGTTTGGTT GGTAACCTTTGCCAGTGTGCTGGGGATCGGAGTGGAGCAGGGGATCGGAATAGGGGTGTTAGTCTCCATCCTGCTCTTTC TTTGGCGGGCTAGCCGTCCTCACATTGCCATCGTGGGTCAGGTGCCCGGTACGGAGCACTACCGCAACGTGCAGCGCCAT GAGGTGATTACCGATCCCCGTATCTTGGCAGTGCGGGTGGACGAGAGCCTGTTTTTTGCCAACGCAGCCTACTTGCAGGA GTATCTGCTGCGAGAGGTGGCGGCGCGACCCACAGTGGAGCAGGTGCTGCTCGTTGCCAGCGCCATCAACTTCATCGACG GCAGCGCTTTGGAAGTGCTGACCCAGTTGGTGGAACGTTTGCAGCAGGCAGGGGTGGGCTTTGCCATGGCCGAGGTGAAG GGGCCGGTAATGGATCGCCTCCAAAAGGCTGGGTTTGTGGAGAAAGTGGGCGCTGAGCGCTTCTTCCTCTCCACTCACCA GGCGATGCAAGCCCTCGGATCCCAGCAGAGCCTCAGTCAGGTGTCATCTTCCTGA
Upstream 100 bases:
>100_bases GTGGCTTTGTGGGCGCCGGGCTGGTGTTTGCGGGTGTAACCAACACCTGTGGCATGGCTCTGCTCTTGGCTCGCATGCCC TGGAACCGAGGTCAGGCGCT
Downstream 100 bases:
>100_bases TCAGCACAAGGGGGGTTTGTTCAGCGGCATTGCCGGCGGGGTTCTTGCCCAGGGCTTGCTCCACCAGCTCCCGCTCTACG CCGGGGCTGGCTGCCAGGAT
Product: sulfate permease
Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 604; Mature: 603
Protein sequence:
>604_residues MSGIPSTSSGGQGILARYLPFAKESLWVFHYQRSDLPGDLIAGLVVAILLVPQSMAYALLAGLPPQVGLYASILPVIVYG LLGSSRALAVGPVAIISLLVAAGLEPLAGRVSGTESLPGSPEYGQLALGLALEVGLVQGAMGLLRLGFLANFLSHTVVTA FGSAAALIIGFSQLRHLLGVKIANTESFLLLVQRLWQSLDKVNWATFGLGLLAVSLLVYAQRKLPHQLRRWGVPPGWALI LTKGAPLAAVLVTSLLVWGLNLSERAGVSVVGSIPSGLPPLGFPSLSWGQWTALLPTALAISLVGFTESYAVGQSLASQR RQKVDPNQDLVALGAANLAAACSGGYPVTGGISRSVVNFQAGANSGLASLITGLLVALTVIWLMPLFTFLPQTTLAAIVL VAVLALVDFHPLLQSWRYDRGDALVWLVTFASVLGIGVEQGIGIGVLVSILLFLWRASRPHIAIVGQVPGTEHYRNVQRH EVITDPRILAVRVDESLFFANAAYLQEYLLREVAARPTVEQVLLVASAINFIDGSALEVLTQLVERLQQAGVGFAMAEVK GPVMDRLQKAGFVEKVGAERFFLSTHQAMQALGSQQSLSQVSSS
Sequences:
>Translated_604_residues MSGIPSTSSGGQGILARYLPFAKESLWVFHYQRSDLPGDLIAGLVVAILLVPQSMAYALLAGLPPQVGLYASILPVIVYG LLGSSRALAVGPVAIISLLVAAGLEPLAGRVSGTESLPGSPEYGQLALGLALEVGLVQGAMGLLRLGFLANFLSHTVVTA FGSAAALIIGFSQLRHLLGVKIANTESFLLLVQRLWQSLDKVNWATFGLGLLAVSLLVYAQRKLPHQLRRWGVPPGWALI LTKGAPLAAVLVTSLLVWGLNLSERAGVSVVGSIPSGLPPLGFPSLSWGQWTALLPTALAISLVGFTESYAVGQSLASQR RQKVDPNQDLVALGAANLAAACSGGYPVTGGISRSVVNFQAGANSGLASLITGLLVALTVIWLMPLFTFLPQTTLAAIVL VAVLALVDFHPLLQSWRYDRGDALVWLVTFASVLGIGVEQGIGIGVLVSILLFLWRASRPHIAIVGQVPGTEHYRNVQRH EVITDPRILAVRVDESLFFANAAYLQEYLLREVAARPTVEQVLLVASAINFIDGSALEVLTQLVERLQQAGVGFAMAEVK GPVMDRLQKAGFVEKVGAERFFLSTHQAMQALGSQQSLSQVSSS >Mature_603_residues SGIPSTSSGGQGILARYLPFAKESLWVFHYQRSDLPGDLIAGLVVAILLVPQSMAYALLAGLPPQVGLYASILPVIVYGL LGSSRALAVGPVAIISLLVAAGLEPLAGRVSGTESLPGSPEYGQLALGLALEVGLVQGAMGLLRLGFLANFLSHTVVTAF GSAAALIIGFSQLRHLLGVKIANTESFLLLVQRLWQSLDKVNWATFGLGLLAVSLLVYAQRKLPHQLRRWGVPPGWALIL TKGAPLAAVLVTSLLVWGLNLSERAGVSVVGSIPSGLPPLGFPSLSWGQWTALLPTALAISLVGFTESYAVGQSLASQRR QKVDPNQDLVALGAANLAAACSGGYPVTGGISRSVVNFQAGANSGLASLITGLLVALTVIWLMPLFTFLPQTTLAAIVLV AVLALVDFHPLLQSWRYDRGDALVWLVTFASVLGIGVEQGIGIGVLVSILLFLWRASRPHIAIVGQVPGTEHYRNVQRHE VITDPRILAVRVDESLFFANAAYLQEYLLREVAARPTVEQVLLVASAINFIDGSALEVLTQLVERLQQAGVGFAMAEVKG PVMDRLQKAGFVEKVGAERFFLSTHQAMQALGSQQSLSQVSSS
Specific function: Expression in E.coli induces sulfate uptake during early-to mid-log phase growth. Uptake is maximal at pH 6.0, is sulfate-specific, requires E.coli CysA and the transmembrane segment but not the STAS domain of the protein [H]
COG id: COG0659
COG function: function code P; Sulfate permease and related transporters (MFS superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 STAS domain [H]
Homologues:
Organism=Homo sapiens, GI45827800, Length=527, Percent_Identity=30.1707779886148, Blast_Score=230, Evalue=3e-60, Organism=Homo sapiens, GI39752683, Length=527, Percent_Identity=30.1707779886148, Blast_Score=229, Evalue=5e-60, Organism=Homo sapiens, GI94721253, Length=476, Percent_Identity=33.4033613445378, Blast_Score=225, Evalue=8e-59, Organism=Homo sapiens, GI94721255, Length=476, Percent_Identity=33.4033613445378, Blast_Score=225, Evalue=8e-59, Organism=Homo sapiens, GI94721257, Length=476, Percent_Identity=33.4033613445378, Blast_Score=225, Evalue=8e-59, Organism=Homo sapiens, GI94721259, Length=476, Percent_Identity=33.4033613445378, Blast_Score=225, Evalue=9e-59, Organism=Homo sapiens, GI262206105, Length=585, Percent_Identity=30.7692307692308, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI262206075, Length=585, Percent_Identity=30.7692307692308, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI262206069, Length=585, Percent_Identity=30.7692307692308, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI262206063, Length=585, Percent_Identity=30.7692307692308, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI269784651, Length=526, Percent_Identity=28.7072243346008, Blast_Score=208, Evalue=1e-53, Organism=Homo sapiens, GI45827802, Length=465, Percent_Identity=30.9677419354839, Blast_Score=203, Evalue=4e-52, Organism=Homo sapiens, GI47131207, Length=638, Percent_Identity=28.3699059561129, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI20336272, Length=638, Percent_Identity=28.3699059561129, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI100913030, Length=630, Percent_Identity=24.6031746031746, Blast_Score=183, Evalue=5e-46, Organism=Homo sapiens, GI4557535, Length=513, Percent_Identity=26.1208576998051, Blast_Score=178, Evalue=2e-44, Organism=Homo sapiens, GI4505697, Length=513, Percent_Identity=26.5107212475634, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI16418413, Length=523, Percent_Identity=26.7686424474187, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI217272867, Length=523, Percent_Identity=26.7686424474187, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI16306483, Length=630, Percent_Identity=22.2222222222222, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI16418457, Length=521, Percent_Identity=27.6391554702495, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI301601599, Length=521, Percent_Identity=27.6391554702495, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI20336282, Length=512, Percent_Identity=24.0234375, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI65506789, Length=555, Percent_Identity=27.3873873873874, Blast_Score=127, Evalue=4e-29, Organism=Homo sapiens, GI45827804, Length=303, Percent_Identity=31.023102310231, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI301601602, Length=204, Percent_Identity=31.3725490196078, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI20336274, Length=75, Percent_Identity=45.3333333333333, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI87081859, Length=608, Percent_Identity=25.8223684210526, Blast_Score=119, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17551690, Length=612, Percent_Identity=23.3660130718954, Blast_Score=206, Evalue=3e-53, Organism=Caenorhabditis elegans, GI17566848, Length=606, Percent_Identity=28.8778877887789, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17562578, Length=639, Percent_Identity=25.1956181533646, Blast_Score=197, Evalue=2e-50, Organism=Caenorhabditis elegans, GI86564196, Length=625, Percent_Identity=23.68, Blast_Score=191, Evalue=7e-49, Organism=Caenorhabditis elegans, GI86565215, Length=458, Percent_Identity=29.2576419213974, Blast_Score=181, Evalue=1e-45, Organism=Caenorhabditis elegans, GI193203292, Length=517, Percent_Identity=26.8858800773694, Blast_Score=154, Evalue=2e-37, Organism=Caenorhabditis elegans, GI86564876, Length=523, Percent_Identity=24.6653919694073, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI86565213, Length=273, Percent_Identity=32.2344322344322, Blast_Score=115, Evalue=7e-26, Organism=Caenorhabditis elegans, GI86565209, Length=244, Percent_Identity=28.6885245901639, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI86565211, Length=244, Percent_Identity=28.6885245901639, Blast_Score=94, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6323121, Length=469, Percent_Identity=29.2110874200426, Blast_Score=171, Evalue=3e-43, Organism=Saccharomyces cerevisiae, GI6319771, Length=466, Percent_Identity=26.8240343347639, Blast_Score=160, Evalue=6e-40, Organism=Saccharomyces cerevisiae, GI6325260, Length=613, Percent_Identity=25.2854812398042, Blast_Score=156, Evalue=9e-39, Organism=Drosophila melanogaster, GI24651449, Length=579, Percent_Identity=27.4611398963731, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI24666186, Length=541, Percent_Identity=28.4658040665434, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24649801, Length=553, Percent_Identity=28.9330922242315, Blast_Score=188, Evalue=8e-48, Organism=Drosophila melanogaster, GI85815873, Length=516, Percent_Identity=30.0387596899225, Blast_Score=184, Evalue=2e-46, Organism=Drosophila melanogaster, GI24663084, Length=471, Percent_Identity=31.4225053078556, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI21357695, Length=471, Percent_Identity=31.4225053078556, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI19922482, Length=527, Percent_Identity=28.0834914611006, Blast_Score=180, Evalue=3e-45, Organism=Drosophila melanogaster, GI21358229, Length=550, Percent_Identity=26.1818181818182, Blast_Score=163, Evalue=3e-40, Organism=Drosophila melanogaster, GI21355087, Length=470, Percent_Identity=26.1702127659574, Blast_Score=163, Evalue=4e-40, Organism=Drosophila melanogaster, GI24647160, Length=470, Percent_Identity=26.1702127659574, Blast_Score=162, Evalue=5e-40, Organism=Drosophila melanogaster, GI21358633, Length=579, Percent_Identity=25.0431778929188, Blast_Score=159, Evalue=4e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002645 - InterPro: IPR001902 - InterPro: IPR011547 [H]
Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]
EC number: NA
Molecular weight: Translated: 63880; Mature: 63748
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS50801 STAS ; PS01130 SLC26A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGIPSTSSGGQGILARYLPFAKESLWVFHYQRSDLPGDLIAGLVVAILLVPQSMAYALL CCCCCCCCCCCCHHHHHHCCHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH AGLPPQVGLYASILPVIVYGLLGSSRALAVGPVAIISLLVAAGLEPLAGRVSGTESLPGS HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC PEYGQLALGLALEVGLVQGAMGLLRLGFLANFLSHTVVTAFGSAAALIIGFSQLRHLLGV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KIANTESFLLLVQRLWQSLDKVNWATFGLGLLAVSLLVYAQRKLPHQLRRWGVPPGWALI EECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE LTKGAPLAAVLVTSLLVWGLNLSERAGVSVVGSIPSGLPPLGFPSLSWGQWTALLPTALA EECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH ISLVGFTESYAVGQSLASQRRQKVDPNQDLVALGAANLAAACSGGYPVTGGISRSVVNFQ HHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHEEEC AGANSGLASLITGLLVALTVIWLMPLFTFLPQTTLAAIVLVAVLALVDFHPLLQSWRYDR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GDALVWLVTFASVLGIGVEQGIGIGVLVSILLFLWRASRPHIAIVGQVPGTEHYRNVQRH CCHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH EVITDPRILAVRVDESLFFANAAYLQEYLLREVAARPTVEQVLLVASAINFIDGSALEVL HCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH TQLVERLQQAGVGFAMAEVKGPVMDRLQKAGFVEKVGAERFFLSTHQAMQALGSQQSLSQ HHHHHHHHHCCCCEEHHHHCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHH VSSS HHCC >Mature Secondary Structure SGIPSTSSGGQGILARYLPFAKESLWVFHYQRSDLPGDLIAGLVVAILLVPQSMAYALL CCCCCCCCCCCHHHHHHCCHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH AGLPPQVGLYASILPVIVYGLLGSSRALAVGPVAIISLLVAAGLEPLAGRVSGTESLPGS HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC PEYGQLALGLALEVGLVQGAMGLLRLGFLANFLSHTVVTAFGSAAALIIGFSQLRHLLGV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KIANTESFLLLVQRLWQSLDKVNWATFGLGLLAVSLLVYAQRKLPHQLRRWGVPPGWALI EECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE LTKGAPLAAVLVTSLLVWGLNLSERAGVSVVGSIPSGLPPLGFPSLSWGQWTALLPTALA EECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH ISLVGFTESYAVGQSLASQRRQKVDPNQDLVALGAANLAAACSGGYPVTGGISRSVVNFQ HHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCHHHEEEC AGANSGLASLITGLLVALTVIWLMPLFTFLPQTTLAAIVLVAVLALVDFHPLLQSWRYDR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GDALVWLVTFASVLGIGVEQGIGIGVLVSILLFLWRASRPHIAIVGQVPGTEHYRNVQRH CCHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH EVITDPRILAVRVDESLFFANAAYLQEYLLREVAARPTVEQVLLVASAINFIDGSALEVL HCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH TQLVERLQQAGVGFAMAEVKGPVMDRLQKAGFVEKVGAERFFLSTHQAMQALGSQQSLSQ HHHHHHHHHCCCCEEHHHHCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHH VSSS HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]
Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]