Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609379

Identifier: 86609379

GI number: 86609379

Start: 2007301

End: 2008440

Strand: Direct

Name: 86609379

Synonym: CYB_1924

Alternate gene names: NA

Gene position: 2007301-2008440 (Clockwise)

Preceding gene: 86609376

Following gene: 86609384

Centisome position: 65.88

GC content: 63.51

Gene sequence:

>1140_bases
GTGGCCGGGTTGCTGCTGAGTTTGGGCAGCTTGCTCTACTGGCTCAAGACCCGCCCCGCTGACCAGCTGGTGGTGGAACC
CAAGGGCTGGGGCATAGGCCGCCACACCCCCGAGCACTGGGTCATTCAAGCGGAGTTTGTGGCTCGCAACCTCAACCCCC
TCTTTGAGGTCACCTTGGCCCAGGTGGAGCCGCGACTGCATTTGCTCAGCGCCGGATCCCTAGAAGGCATTGACACCCGC
CTACGCCTGCGCTCTCGCCATCCGGATCTTCCCCCCCGGCAAGACAACTACTGGCAGGCTTATATCCTCACCCCCCAGAG
CCAGACTGGCCTAGAAGTCGAGATCGAGCTGAAGGGGAAAGGGCTAGCGGATCTGCGCTCGGCCTGGCTCCAGCTGGACT
ACATTCAGTACGGGCGGCAGCGGCGCACCCTCAAGACCAGCCACCTCATCCTGCCGTTGCAAGAGGTGGATCCCTTGCCG
GAGCTGAACTGGCAGCAGCAGGGATCCCTCCTTTGGGCCGCCGTTCCCACCCATCTGCTGACCCCCAGCGATGACTTGGC
CGAGGTGCTACGGCGGTATGTAGGCCCTCACATCCAGCCCGGCGATATGGTGGCCATCTCGGAAAGCGCCGTGGCTATTG
TCCAGGGCAACTTCCGCCATCCCCTGCAGGTGCAGCCCGGCTGGCTGGCCCGCACCCTGTGCTACTTCTTCCCCTCCAAG
ACCAGTCTTTCAAGCTGCTACGGGATGCAGACTTTGATCGACTGCTCCGGGGCCTGGCGGGTGGTGTGGGCTTTTGTGGT
GGGATCCCTGGCCAAACTGCTGGGGATCCCGGGGGTCTTTTATGCCCTGGCGGGGGAGCAGGCCGATCTCATCGACGACG
TTACTGGCACCCTGCCTCCCTATGACCAGTTCATCGTGCTGGGGCCGCGGGATCCGGCCAAGTTGGTGGGGGATCTGCAT
CGGCAGACGGGCTACGAAGTGGCCATCGTGGATGCCAACGATCTGGGGCAGGTCAAGATCCTGGCAGCCAGCCCCGGCGT
AGAGCGGGAGCTGGTGGAGCAAGCCCTGGGCAAGAACCCCGCCGGCAATGCCGCTGAACAAACCCCCCTTGTGCTGATCA
GGAAGATGACACCTGACTGA

Upstream 100 bases:

>100_bases
GGTGAATCGTGGCGTATTGGCCACAGTGCTGGCCGGGGTAGGACTCAGCCTATGGGGGGCTTGGCGTTGGCTGTGGGATC
CCTGGGGCTGGGCTCAGGTA

Downstream 100 bases:

>100_bases
GGCTCTGCTGGGATCCGAGGGCTTGCATCGCCTGGTGAGTGGAGAGGAAGAAGCGCTCAGCGCCCACTTTCTCCACAAAC
CCAGCCTTTTGGAGGCGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAGLLLSLGSLLYWLKTRPADQLVVEPKGWGIGRHTPEHWVIQAEFVARNLNPLFEVTLAQVEPRLHLLSAGSLEGIDTR
LRLRSRHPDLPPRQDNYWQAYILTPQSQTGLEVEIELKGKGLADLRSAWLQLDYIQYGRQRRTLKTSHLILPLQEVDPLP
ELNWQQQGSLLWAAVPTHLLTPSDDLAEVLRRYVGPHIQPGDMVAISESAVAIVQGNFRHPLQVQPGWLARTLCYFFPSK
TSLSSCYGMQTLIDCSGAWRVVWAFVVGSLAKLLGIPGVFYALAGEQADLIDDVTGTLPPYDQFIVLGPRDPAKLVGDLH
RQTGYEVAIVDANDLGQVKILAASPGVERELVEQALGKNPAGNAAEQTPLVLIRKMTPD

Sequences:

>Translated_379_residues
MAGLLLSLGSLLYWLKTRPADQLVVEPKGWGIGRHTPEHWVIQAEFVARNLNPLFEVTLAQVEPRLHLLSAGSLEGIDTR
LRLRSRHPDLPPRQDNYWQAYILTPQSQTGLEVEIELKGKGLADLRSAWLQLDYIQYGRQRRTLKTSHLILPLQEVDPLP
ELNWQQQGSLLWAAVPTHLLTPSDDLAEVLRRYVGPHIQPGDMVAISESAVAIVQGNFRHPLQVQPGWLARTLCYFFPSK
TSLSSCYGMQTLIDCSGAWRVVWAFVVGSLAKLLGIPGVFYALAGEQADLIDDVTGTLPPYDQFIVLGPRDPAKLVGDLH
RQTGYEVAIVDANDLGQVKILAASPGVERELVEQALGKNPAGNAAEQTPLVLIRKMTPD
>Mature_378_residues
AGLLLSLGSLLYWLKTRPADQLVVEPKGWGIGRHTPEHWVIQAEFVARNLNPLFEVTLAQVEPRLHLLSAGSLEGIDTRL
RLRSRHPDLPPRQDNYWQAYILTPQSQTGLEVEIELKGKGLADLRSAWLQLDYIQYGRQRRTLKTSHLILPLQEVDPLPE
LNWQQQGSLLWAAVPTHLLTPSDDLAEVLRRYVGPHIQPGDMVAISESAVAIVQGNFRHPLQVQPGWLARTLCYFFPSKT
SLSSCYGMQTLIDCSGAWRVVWAFVVGSLAKLLGIPGVFYALAGEQADLIDDVTGTLPPYDQFIVLGPRDPAKLVGDLHR
QTGYEVAIVDANDLGQVKILAASPGVERELVEQALGKNPAGNAAEQTPLVLIRKMTPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41996; Mature: 41865

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLLLSLGSLLYWLKTRPADQLVVEPKGWGIGRHTPEHWVIQAEFVARNLNPLFEVTLA
CCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEEHHHHHCCCCHHHHHHHH
QVEPRLHLLSAGSLEGIDTRLRLRSRHPDLPPRQDNYWQAYILTPQSQTGLEVEIELKGK
HHCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCC
GLADLRSAWLQLDYIQYGRQRRTLKTSHLILPLQEVDPLPELNWQQQGSLLWAAVPTHLL
CHHHHHHHHHHHHHHHHCCHHCCEECCEEEEEHHHCCCCCCCCCCCCCCEEEEECCCCCC
TPSDDLAEVLRRYVGPHIQPGDMVAISESAVAIVQGNFRHPLQVQPGWLARTLCYFFPSK
CCCHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCCCCEECCCHHHHHHHHHCCCC
TSLSSCYGMQTLIDCSGAWRVVWAFVVGSLAKLLGIPGVFYALAGEQADLIDDVTGTLPP
CCHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCHHHHHHHCCCCCC
YDQFIVLGPRDPAKLVGDLHRQTGYEVAIVDANDLGQVKILAASPGVERELVEQALGKNP
CCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCC
AGNAAEQTPLVLIRKMTPD
CCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
AGLLLSLGSLLYWLKTRPADQLVVEPKGWGIGRHTPEHWVIQAEFVARNLNPLFEVTLA
CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEEHHHHHCCCCHHHHHHHH
QVEPRLHLLSAGSLEGIDTRLRLRSRHPDLPPRQDNYWQAYILTPQSQTGLEVEIELKGK
HHCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCC
GLADLRSAWLQLDYIQYGRQRRTLKTSHLILPLQEVDPLPELNWQQQGSLLWAAVPTHLL
CHHHHHHHHHHHHHHHHCCHHCCEECCEEEEEHHHCCCCCCCCCCCCCCEEEEECCCCCC
TPSDDLAEVLRRYVGPHIQPGDMVAISESAVAIVQGNFRHPLQVQPGWLARTLCYFFPSK
CCCHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCCCCEECCCHHHHHHHHHCCCC
TSLSSCYGMQTLIDCSGAWRVVWAFVVGSLAKLLGIPGVFYALAGEQADLIDDVTGTLPP
CCHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHCCCCHHHHHHHCCCCCC
YDQFIVLGPRDPAKLVGDLHRQTGYEVAIVDANDLGQVKILAASPGVERELVEQALGKNP
CCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCC
AGNAAEQTPLVLIRKMTPD
CCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA