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The map label for this gene is appB [H]

Identifier: 86609340

GI number: 86609340

Start: 1968295

End: 1969296

Strand: Reverse

Name: appB [H]

Synonym: CYB_1884

Alternate gene names: 86609340

Gene position: 1969296-1968295 (Counterclockwise)

Preceding gene: 86609341

Following gene: 86609339

Centisome position: 64.64

GC content: 56.59

Gene sequence:

>1002_bases
ATGGACGTGCAACTGAGGTCAGTTCTGCTGTTTCTGGCTTATAAGCTGACTCGGCTGGGGTTGCTGCTGGCGGCTGTGGC
AGTCCTGACGTTTGCCCTGCTCAGCTTCTCCCCTGTTGATCCCGTACAAGCCTATGTAGGGGCCGACATGCTGCAGATCA
GCCCAGCCCAACGAGACCTGATTGCCCAGCGTTGGGGGCTGGATCAGCCCATGCTGCTTCGCTTTGGGAACTGGCTTGGG
CAGATGGTTCAAGGCAACTGGGGCACCTCAATGGTGTTCGATCAGCCAGTGGTGCAGGTCATTCAACAGCGGTTTGAGCT
ATCGCTGCCCTTACTGGCAATTGCCTGGCTGCTTTCCGGTTTCCTGGGAGTGGGGTTGGGGGTTTTGGCCGCAGCGTTTC
AGGGCGCTTGGGTTGACCGCAGTATTCGTCTTTACGCCTACACCCTCGCCTCTTCTCCCCCTTTCTGGGTGGCGCTGCTA
CTCTTGATCGCGTTTTCGGTAGAGCTGGGTCTAACACCTATCTGTTGCGCCGCGCCACCTGGCGCGTTGGCGGAGGAGGT
GACTTTTTGGCAGCGCTTACACCACTTGCTCTTGCCTGCTTTCACCCTAACTTTCATCGGCGTTGCCAACATCACCTTGC
ACACTCGTCAGAAGCTCATTGACGTGTTGCACAGCAACTATGTGCTGTTTGCTCGTGCCCAGGGGGAAAGCCTGGCTGGG
ATCCTGTGGTACCACGGCTTGCGGAATATCTTGCTGCCTGCGCTGACGCTGCAATTTGCCTCCTTTGGGGAACTGTTTGG
TGGCTCAGTGTTAGTGGAACAGGTGTTTGCTTATCCAGGACTGGGACAAGCAACGGTACAGGCAGCTTTGCGCAGTGATG
TGCCTCTGTTGGTGGGCATTGTGTTTTTCAGCGCCTTGTTTGTCTATGCCGGCAATACCCTAGCTGACCTGTCCTACCAG
ATTGTCGATCCACGCATTCGCCTTGGCGGGAGGATAGGATGA

Upstream 100 bases:

>100_bases
ATCATACCTACTTTGTCCAAGAGTGCTTGGATATAGGCCAGCCGCAGGTACAGCCTCATGGCCATGGTTGGCCAATCACA
GCCAACATCACCCGTTGGAA

Downstream 100 bases:

>100_bases
TCCCTTTTGCATCGCCTCGTGTTGCTGCTGCTGATGCCGATGGGGGGATGAAATTCTCAGAGTCCTCTGTCAAAGGAGAG
CGCAGGCGGCAGACTCTGTG

Product: peptide/opine/nickel ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDVQLRSVLLFLAYKLTRLGLLLAAVAVLTFALLSFSPVDPVQAYVGADMLQISPAQRDLIAQRWGLDQPMLLRFGNWLG
QMVQGNWGTSMVFDQPVVQVIQQRFELSLPLLAIAWLLSGFLGVGLGVLAAAFQGAWVDRSIRLYAYTLASSPPFWVALL
LLIAFSVELGLTPICCAAPPGALAEEVTFWQRLHHLLLPAFTLTFIGVANITLHTRQKLIDVLHSNYVLFARAQGESLAG
ILWYHGLRNILLPALTLQFASFGELFGGSVLVEQVFAYPGLGQATVQAALRSDVPLLVGIVFFSALFVYAGNTLADLSYQ
IVDPRIRLGGRIG

Sequences:

>Translated_333_residues
MDVQLRSVLLFLAYKLTRLGLLLAAVAVLTFALLSFSPVDPVQAYVGADMLQISPAQRDLIAQRWGLDQPMLLRFGNWLG
QMVQGNWGTSMVFDQPVVQVIQQRFELSLPLLAIAWLLSGFLGVGLGVLAAAFQGAWVDRSIRLYAYTLASSPPFWVALL
LLIAFSVELGLTPICCAAPPGALAEEVTFWQRLHHLLLPAFTLTFIGVANITLHTRQKLIDVLHSNYVLFARAQGESLAG
ILWYHGLRNILLPALTLQFASFGELFGGSVLVEQVFAYPGLGQATVQAALRSDVPLLVGIVFFSALFVYAGNTLADLSYQ
IVDPRIRLGGRIG
>Mature_333_residues
MDVQLRSVLLFLAYKLTRLGLLLAAVAVLTFALLSFSPVDPVQAYVGADMLQISPAQRDLIAQRWGLDQPMLLRFGNWLG
QMVQGNWGTSMVFDQPVVQVIQQRFELSLPLLAIAWLLSGFLGVGLGVLAAAFQGAWVDRSIRLYAYTLASSPPFWVALL
LLIAFSVELGLTPICCAAPPGALAEEVTFWQRLHHLLLPAFTLTFIGVANITLHTRQKLIDVLHSNYVLFARAQGESLAG
ILWYHGLRNILLPALTLQFASFGELFGGSVLVEQVFAYPGLGQATVQAALRSDVPLLVGIVFFSALFVYAGNTLADLSYQ
IVDPRIRLGGRIG

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=31.6568047337278, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787053, Length=321, Percent_Identity=35.202492211838, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789888, Length=319, Percent_Identity=30.7210031347962, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=32.4159021406728, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787497, Length=302, Percent_Identity=29.4701986754967, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788504, Length=276, Percent_Identity=27.8985507246377, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=25.7462686567164, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36379; Mature: 36379

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQLRSVLLFLAYKLTRLGLLLAAVAVLTFALLSFSPVDPVQAYVGADMLQISPAQRDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEECHHHHHH
IAQRWGLDQPMLLRFGNWLGQMVQGNWGTSMVFDQPVVQVIQQRFELSLPLLAIAWLLSG
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
FLGVGLGVLAAAFQGAWVDRSIRLYAYTLASSPPFWVALLLLIAFSVELGLTPICCAAPP
HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCC
GALAEEVTFWQRLHHLLLPAFTLTFIGVANITLHTRQKLIDVLHSNYVLFARAQGESLAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH
ILWYHGLRNILLPALTLQFASFGELFGGSVLVEQVFAYPGLGQATVQAALRSDVPLLVGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH
VFFSALFVYAGNTLADLSYQIVDPRIRLGGRIG
HHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCC
>Mature Secondary Structure
MDVQLRSVLLFLAYKLTRLGLLLAAVAVLTFALLSFSPVDPVQAYVGADMLQISPAQRDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHEECHHHHHH
IAQRWGLDQPMLLRFGNWLGQMVQGNWGTSMVFDQPVVQVIQQRFELSLPLLAIAWLLSG
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
FLGVGLGVLAAAFQGAWVDRSIRLYAYTLASSPPFWVALLLLIAFSVELGLTPICCAAPP
HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCC
GALAEEVTFWQRLHHLLLPAFTLTFIGVANITLHTRQKLIDVLHSNYVLFARAQGESLAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHH
ILWYHGLRNILLPALTLQFASFGELFGGSVLVEQVFAYPGLGQATVQAALRSDVPLLVGI
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH
VFFSALFVYAGNTLADLSYQIVDPRIRLGGRIG
HHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]