| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is oppD [H]
Identifier: 86609338
GI number: 86609338
Start: 1966471
End: 1967400
Strand: Reverse
Name: oppD [H]
Synonym: CYB_1882
Alternate gene names: 86609338
Gene position: 1967400-1966471 (Counterclockwise)
Preceding gene: 86609339
Following gene: 86609337
Centisome position: 64.58
GC content: 61.51
Gene sequence:
>930_bases ATGTTGGTGGTCTCCGGCCTAAACATTAGGTTCAGCCGATACGAGCGGGGGCTGCGCCGCCGCTACCTTCAGGTGATTAC AGATCTGGATCTGGAGGTTAAGGCAGGGGAGGTGGTGGCAGTGGTGGGGGCCAGCGGATCGGGCAAAAGTTTGCTGGCCC ATGCCCTCTTGGGTCTTTTGCCAGAGAACGCTACCCTGCGCGGTACTCTCCTATTTCAGGGGCAGCCCTTGACCCCTGAG CGGTGTAGGCAACTGCGCGGCAAGGCCATTGCTCTCATCCCCCAGTCTGTGGACTACCTGGATCCCCTCATGCAAGTAGG ATCCCAGGTACAGCGGGTAGCTCGGCTCAGCGGTGCCTCCCAAGGCGAGGCCCGTAGAGCAGTGAGCCGCATCTTTGCCC GCTATAGCTTGCCGCCGGGAACAGAGGGCCTCTACCCTTTCCAGCTCTCCGGAGGCATGGCACGGCGGGTGCTGGTATCG ACGGCGGCAGTTAGCAGAGCCAAGCTGGTGATAGCCGACGAGCCCACGCCAGGCTTGGACGCGGAGGTGGTGGCTGAGAC CCTTGCCCATCTGCGGGAACTGGCCCAGGAGGGCCGAGGCGTTATGTTGATTACACACGATATTCAGGCGGCGTTGTCGG TGGCAGATCGAGTGGCAGTCTTCTATGCGGGCACTACAGTCGAGTTGGCCTCGGCTCAGGATTTCGAAAGGGGAAACTTG CGCCACCCCTACACTCAAGCTCTGTGGCGATCCCTGCCCCAAAATGAGTTTGCTCCCCTGCCGGGCAACCAGCCTGACCC TGAGGCACTGCCTGCGGGTTGTTTGTTTGGGGATCGCTGCCCCTGGGCAAGTGAAATCTGTCGAGCTGAGCATCCGCCTC TGCGGGCGGTTGGAGGAGGGTGGGTGAGGTGTATCCATGCTCAAGGGTGA
Upstream 100 bases:
>100_bases ATGCCTGGACTGCTGCTGCTGCTGTCGGTCAAGGCTTTTGACTGGCTGGGAGAAAACCTGCAGGCCCTTCTCAATCCGCG TACGGCTCAGGAGTAGGGAA
Downstream 100 bases:
>100_bases GCATCTCTGGTTTCGCTATGGACGGCATCTGCCTTGGGTGGTGCAAGATCAGACCCTTCAAGTAGAACTTGGGGAAGTCG TAGGGCTGATGGCTCCCTCT
Product: oligopeptide/dipeptide ABC transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MLVVSGLNIRFSRYERGLRRRYLQVITDLDLEVKAGEVVAVVGASGSGKSLLAHALLGLLPENATLRGTLLFQGQPLTPE RCRQLRGKAIALIPQSVDYLDPLMQVGSQVQRVARLSGASQGEARRAVSRIFARYSLPPGTEGLYPFQLSGGMARRVLVS TAAVSRAKLVIADEPTPGLDAEVVAETLAHLRELAQEGRGVMLITHDIQAALSVADRVAVFYAGTTVELASAQDFERGNL RHPYTQALWRSLPQNEFAPLPGNQPDPEALPAGCLFGDRCPWASEICRAEHPPLRAVGGGWVRCIHAQG
Sequences:
>Translated_309_residues MLVVSGLNIRFSRYERGLRRRYLQVITDLDLEVKAGEVVAVVGASGSGKSLLAHALLGLLPENATLRGTLLFQGQPLTPE RCRQLRGKAIALIPQSVDYLDPLMQVGSQVQRVARLSGASQGEARRAVSRIFARYSLPPGTEGLYPFQLSGGMARRVLVS TAAVSRAKLVIADEPTPGLDAEVVAETLAHLRELAQEGRGVMLITHDIQAALSVADRVAVFYAGTTVELASAQDFERGNL RHPYTQALWRSLPQNEFAPLPGNQPDPEALPAGCLFGDRCPWASEICRAEHPPLRAVGGGWVRCIHAQG >Mature_309_residues MLVVSGLNIRFSRYERGLRRRYLQVITDLDLEVKAGEVVAVVGASGSGKSLLAHALLGLLPENATLRGTLLFQGQPLTPE RCRQLRGKAIALIPQSVDYLDPLMQVGSQVQRVARLSGASQGEARRAVSRIFARYSLPPGTEGLYPFQLSGGMARRVLVS TAAVSRAKLVIADEPTPGLDAEVVAETLAHLRELAQEGRGVMLITHDIQAALSVADRVAVFYAGTTVELASAQDFERGNL RHPYTQALWRSLPQNEFAPLPGNQPDPEALPAGCLFGDRCPWASEICRAEHPPLRAVGGGWVRCIHAQG
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=209, Percent_Identity=29.6650717703349, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9961250, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4505771, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9961252, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI47078218, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI45446740, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI11967969, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI42741659, Length=231, Percent_Identity=29.004329004329, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI11967971, Length=216, Percent_Identity=26.8518518518519, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI105990541, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI255708477, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592978, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI46592964, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI46592971, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI46592956, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI46592898, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI46592915, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48994883, Length=310, Percent_Identity=36.1290322580645, Blast_Score=175, Evalue=4e-45, Organism=Escherichia coli, GI1789963, Length=320, Percent_Identity=35.9375, Blast_Score=167, Evalue=6e-43, Organism=Escherichia coli, GI1787759, Length=297, Percent_Identity=34.6801346801347, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1788506, Length=273, Percent_Identity=36.996336996337, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787500, Length=299, Percent_Identity=30.7692307692308, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=34.2007434944238, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787548, Length=305, Percent_Identity=29.8360655737705, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1789962, Length=297, Percent_Identity=31.6498316498317, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787758, Length=319, Percent_Identity=29.7805642633229, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788225, Length=215, Percent_Identity=33.953488372093, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1789890, Length=248, Percent_Identity=31.8548387096774, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=31.8965517241379, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI48994997, Length=237, Percent_Identity=31.2236286919831, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=33.9366515837104, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787089, Length=233, Percent_Identity=28.755364806867, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1786398, Length=228, Percent_Identity=30.7017543859649, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=35.3846153846154, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=28.9719626168224, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1789032, Length=253, Percent_Identity=27.6679841897233, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787547, Length=239, Percent_Identity=28.8702928870293, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789991, Length=213, Percent_Identity=23.0046948356808, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=27.0742358078603, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=29.1845493562232, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=28.3018867924528, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87081834, Length=222, Percent_Identity=30.1801801801802, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786872, Length=209, Percent_Identity=32.0574162679426, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=27.3972602739726, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=111, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787112, Length=224, Percent_Identity=30.8035714285714, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788165, Length=199, Percent_Identity=29.6482412060301, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=28.5, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788450, Length=208, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790190, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789873, Length=206, Percent_Identity=31.0679611650485, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787792, Length=264, Percent_Identity=25.3787878787879, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=23.4782608695652, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788210, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790467, Length=208, Percent_Identity=27.8846153846154, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788897, Length=212, Percent_Identity=23.5849056603774, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787370, Length=215, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789593, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=28.8288288288288, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=23.4234234234234, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787143, Length=211, Percent_Identity=27.9620853080569, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082267, Length=209, Percent_Identity=29.6650717703349, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=216, Percent_Identity=24.537037037037, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193202349, Length=226, Percent_Identity=27.8761061946903, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115533608, Length=213, Percent_Identity=29.5774647887324, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193209708, Length=214, Percent_Identity=31.3084112149533, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565938, Length=282, Percent_Identity=26.5957446808511, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17541710, Length=242, Percent_Identity=31.8181818181818, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17552232, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71984940, Length=236, Percent_Identity=28.3898305084746, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193208177, Length=222, Percent_Identity=29.7297297297297, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17543740, Length=221, Percent_Identity=27.6018099547511, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17558664, Length=235, Percent_Identity=26.8085106382979, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17552010, Length=197, Percent_Identity=24.8730964467005, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71992290, Length=207, Percent_Identity=29.951690821256, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71996550, Length=240, Percent_Identity=30.4166666666667, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533592, Length=196, Percent_Identity=33.1632653061224, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=29.3838862559242, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI19920532, Length=208, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24580930, Length=208, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574533, Length=221, Percent_Identity=26.6968325791855, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574150, Length=218, Percent_Identity=24.3119266055046, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007328, Length=218, Percent_Identity=24.3119266055046, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648314, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=25.3521126760563, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 33384; Mature: 33384
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVVSGLNIRFSRYERGLRRRYLQVITDLDLEVKAGEVVAVVGASGSGKSLLAHALLGLL CEEEECCCEEHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHC PENATLRGTLLFQGQPLTPERCRQLRGKAIALIPQSVDYLDPLMQVGSQVQRVARLSGAS CCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC QGEARRAVSRIFARYSLPPGTEGLYPFQLSGGMARRVLVSTAAVSRAKLVIADEPTPGLD CHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHEEEEEECCCCCCCC AEVVAETLAHLRELAQEGRGVMLITHDIQAALSVADRVAVFYAGTTVELASAQDFERGNL HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEEEEEECCEEEECCCCCCCCCCC RHPYTQALWRSLPQNEFAPLPGNQPDPEALPAGCLFGDRCPWASEICRAEHPPLRAVGGG CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEECCCC WVRCIHAQG EEEEEECCC >Mature Secondary Structure MLVVSGLNIRFSRYERGLRRRYLQVITDLDLEVKAGEVVAVVGASGSGKSLLAHALLGLL CEEEECCCEEHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHC PENATLRGTLLFQGQPLTPERCRQLRGKAIALIPQSVDYLDPLMQVGSQVQRVARLSGAS CCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC QGEARRAVSRIFARYSLPPGTEGLYPFQLSGGMARRVLVSTAAVSRAKLVIADEPTPGLD CHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHEEEEEECCCCCCCC AEVVAETLAHLRELAQEGRGVMLITHDIQAALSVADRVAVFYAGTTVELASAQDFERGNL HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEEEEEECCEEEECCCCCCCCCCC RHPYTQALWRSLPQNEFAPLPGNQPDPEALPAGCLFGDRCPWASEICRAEHPPLRAVGGG CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEECCCC WVRCIHAQG EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]