Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609332

Identifier: 86609332

GI number: 86609332

Start: 1961105

End: 1961839

Strand: Reverse

Name: 86609332

Synonym: CYB_1876

Alternate gene names: NA

Gene position: 1961839-1961105 (Counterclockwise)

Preceding gene: 86609333

Following gene: 86609331

Centisome position: 64.39

GC content: 60.0

Gene sequence:

>735_bases
ATGGAACTTGCGCCTACGGCTGCCGATGGCGTTGAGGCTCCGCACCGTCCAGAGGACAACAGGGGGACGGATTCCCTGGA
TCTGCCTCACCCTGCGGCATTAGATGTTGAGCCCGATCCATCTGCCGCCGCCTCGTCCCCTCTGTGCCAGGTTGCCACAA
CCCCACCAGAGGCAGGACGGATGCCTCTCCTGGCCAGTGTGCTCTCCACACCTGAAGCTCCTTCTCGGGATGCGGATCCC
TTGTCCAACTTGTCGCCCGCTCCGGTCGAGGTGGAAAGGGTTGTCTCCCCACCCCAGGTCAGTCTGGCCAAATGGGCCAA
TACTTCGCTGCCAACTGAAAAGCCAGCCGAGCTTTTGCCCCCTGCTACTGCTTGCACCGACAATGGGGTTCGCCGCAATG
GCACCCCCAATGGGCAGGGTGCCCAGTCGGATCCCCGCGAGGCTCTGGATGCACAACTGGGCCTGCAAAAGCTTACCCTC
AAATGGTCTGCCGAGAGGGTAGAAAAGCTGGGATCCCTGGAAAGCGCCACCGGCCTACCGGGCGAGATTTTGCTGGAAGT
CTTGCTGGATCATTGGGAACAATTGCCCAAGCCCTTGCAGCAAGATTGCCTCCTGCAAGCCCACCGCATTCGCGTCGAGC
GGCTGGTGATCAGCCAAAACTTCACCATTGCCACGATTGAGCAACTGCTCTTCACGTCAGCGTTGCGCAACAACAACGAG
CAGCATCTGCTTTGA

Upstream 100 bases:

>100_bases
CATGGCTACCGCCAAGAAGCCTCCCAAAAAAAAATTGCCCACCGGCCCCACCAAGGCAGATTTGCTCTCGCGCATGGGGG
TGAATAAGCAGCCAGAGCCG

Downstream 100 bases:

>100_bases
GTTCTGGCCGGTTGGCCTGGGAAATTCCCCCTCAAGATCTCCGCCAGTATGCCAGACAACAGGGATCCCTGTTCCTGTGC
TAGGGTCAAAATGGTTCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MELAPTAADGVEAPHRPEDNRGTDSLDLPHPAALDVEPDPSAAASSPLCQVATTPPEAGRMPLLASVLSTPEAPSRDADP
LSNLSPAPVEVERVVSPPQVSLAKWANTSLPTEKPAELLPPATACTDNGVRRNGTPNGQGAQSDPREALDAQLGLQKLTL
KWSAERVEKLGSLESATGLPGEILLEVLLDHWEQLPKPLQQDCLLQAHRIRVERLVISQNFTIATIEQLLFTSALRNNNE
QHLL

Sequences:

>Translated_244_residues
MELAPTAADGVEAPHRPEDNRGTDSLDLPHPAALDVEPDPSAAASSPLCQVATTPPEAGRMPLLASVLSTPEAPSRDADP
LSNLSPAPVEVERVVSPPQVSLAKWANTSLPTEKPAELLPPATACTDNGVRRNGTPNGQGAQSDPREALDAQLGLQKLTL
KWSAERVEKLGSLESATGLPGEILLEVLLDHWEQLPKPLQQDCLLQAHRIRVERLVISQNFTIATIEQLLFTSALRNNNE
QHLL
>Mature_244_residues
MELAPTAADGVEAPHRPEDNRGTDSLDLPHPAALDVEPDPSAAASSPLCQVATTPPEAGRMPLLASVLSTPEAPSRDADP
LSNLSPAPVEVERVVSPPQVSLAKWANTSLPTEKPAELLPPATACTDNGVRRNGTPNGQGAQSDPREALDAQLGLQKLTL
KWSAERVEKLGSLESATGLPGEILLEVLLDHWEQLPKPLQQDCLLQAHRIRVERLVISQNFTIATIEQLLFTSALRNNNE
QHLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26165; Mature: 26165

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELAPTAADGVEAPHRPEDNRGTDSLDLPHPAALDVEPDPSAAASSPLCQVATTPPEAGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCC
MPLLASVLSTPEAPSRDADPLSNLSPAPVEVERVVSPPQVSLAKWANTSLPTEKPAELLP
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCHHHCC
PATACTDNGVRRNGTPNGQGAQSDPREALDAQLGLQKLTLKWSAERVEKLGSLESATGLP
CCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHCCCCC
GEILLEVLLDHWEQLPKPLQQDCLLQAHRIRVERLVISQNFTIATIEQLLFTSALRNNNE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
QHLL
CCCC
>Mature Secondary Structure
MELAPTAADGVEAPHRPEDNRGTDSLDLPHPAALDVEPDPSAAASSPLCQVATTPPEAGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCC
MPLLASVLSTPEAPSRDADPLSNLSPAPVEVERVVSPPQVSLAKWANTSLPTEKPAELLP
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCHHHCC
PATACTDNGVRRNGTPNGQGAQSDPREALDAQLGLQKLTLKWSAERVEKLGSLESATGLP
CCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHCCCCC
GEILLEVLLDHWEQLPKPLQQDCLLQAHRIRVERLVISQNFTIATIEQLLFTSALRNNNE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
QHLL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA