| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609230
Identifier: 86609230
GI number: 86609230
Start: 1855874
End: 1856446
Strand: Reverse
Name: 86609230
Synonym: CYB_1771
Alternate gene names: NA
Gene position: 1856446-1855874 (Counterclockwise)
Preceding gene: 86609231
Following gene: 86609227
Centisome position: 60.93
GC content: 49.74
Gene sequence:
>573_bases ATGACAACTCGCCTAGATTTGGCTCTCACTCTTGAAGACTTCCTCAAGTTGCCTCACATAGAAGAGTCTCCGGCATGGGA GTACGTGGATGGAGTTGCCATTCAAAAACCGCTGCCCAAAGTCCGCCATTCCATTTTGCAAAAACGCCTCGTGGCTGAGG TTGACGGCAGCACCACCAGCTATACTGCCCTACCCGAATTGCGATGCACTTTTGCCGGTCGTTCCATTGTTCCCGATATT GCCGTAATTGCGTGGGATCGAATTCGCCTAAGTGAAACAGGCGAGCCAGAGGATGACTTCACCGCAGCACCCGACTGGAT TATCGAAATTCTTTCGCCGGGTCAAAGGGTAAGCCGTGTAATCGATAATATCCTGCATTGCCTAAAGCACGGCAGCAAAT TAGGGTGGATGGTGGATTTAGACGATTACTCTGTTTTGATATTTGCCCCTCAACAAGAGCCAGAAATTTGCCGAGGAGAT CGTCAGCTTAAGGTGATCGATGGGATCCAGTTAGCATTGACTCCACAACAAATCTTTGTTCTCCAATACACTACCCCCGC CGCATGGCCGTAA
Upstream 100 bases:
>100_bases ACGCTACATCTACCCGAATTGCCGCAATTTTAATTCCACTTCTTCCCCTCGCTTTGGGATACATTACTGGCAGGGATCCG GGGGGGCTTTGCCTAAACCT
Downstream 100 bases:
>100_bases CCCCCGTGGGATCCAGCACCTTGCCCCGTTCCACCTCGGCATAGACCAGGTAGCGATCCCCGCAGTCCATCCAAGTTTTC ACACGGCACTCCAGGTAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MTTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTSYTALPELRCTFAGRSIVPDI AVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRVIDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGD RQLKVIDGIQLALTPQQIFVLQYTTPAAWP
Sequences:
>Translated_190_residues MTTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTSYTALPELRCTFAGRSIVPDI AVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRVIDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGD RQLKVIDGIQLALTPQQIFVLQYTTPAAWP >Mature_189_residues TTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTSYTALPELRCTFAGRSIVPDIA VIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRVIDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGDR QLKVIDGIQLALTPQQIFVLQYTTPAAWP
Specific function: Unknown
COG id: COG4636
COG function: function code S; Uncharacterized protein conserved in cyanobacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21399; Mature: 21268
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTS CCCEEEEEEEHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE YTALPELRCTFAGRSIVPDIAVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRV EEECCCEEEEECCCCCCCCCEEEEECEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHH IDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGDRQLKVIDGIQLALTPQQIFV HHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCHHHCCCCEEEEECCEEEEECCCEEEE LQYTTPAAWP EEECCCCCCC >Mature Secondary Structure TTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTS CCEEEEEEEHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE YTALPELRCTFAGRSIVPDIAVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRV EEECCCEEEEECCCCCCCCCEEEEECEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHH IDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGDRQLKVIDGIQLALTPQQIFV HHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCHHHCCCCEEEEECCEEEEECCCEEEE LQYTTPAAWP EEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA