Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609230

Identifier: 86609230

GI number: 86609230

Start: 1855874

End: 1856446

Strand: Reverse

Name: 86609230

Synonym: CYB_1771

Alternate gene names: NA

Gene position: 1856446-1855874 (Counterclockwise)

Preceding gene: 86609231

Following gene: 86609227

Centisome position: 60.93

GC content: 49.74

Gene sequence:

>573_bases
ATGACAACTCGCCTAGATTTGGCTCTCACTCTTGAAGACTTCCTCAAGTTGCCTCACATAGAAGAGTCTCCGGCATGGGA
GTACGTGGATGGAGTTGCCATTCAAAAACCGCTGCCCAAAGTCCGCCATTCCATTTTGCAAAAACGCCTCGTGGCTGAGG
TTGACGGCAGCACCACCAGCTATACTGCCCTACCCGAATTGCGATGCACTTTTGCCGGTCGTTCCATTGTTCCCGATATT
GCCGTAATTGCGTGGGATCGAATTCGCCTAAGTGAAACAGGCGAGCCAGAGGATGACTTCACCGCAGCACCCGACTGGAT
TATCGAAATTCTTTCGCCGGGTCAAAGGGTAAGCCGTGTAATCGATAATATCCTGCATTGCCTAAAGCACGGCAGCAAAT
TAGGGTGGATGGTGGATTTAGACGATTACTCTGTTTTGATATTTGCCCCTCAACAAGAGCCAGAAATTTGCCGAGGAGAT
CGTCAGCTTAAGGTGATCGATGGGATCCAGTTAGCATTGACTCCACAACAAATCTTTGTTCTCCAATACACTACCCCCGC
CGCATGGCCGTAA

Upstream 100 bases:

>100_bases
ACGCTACATCTACCCGAATTGCCGCAATTTTAATTCCACTTCTTCCCCTCGCTTTGGGATACATTACTGGCAGGGATCCG
GGGGGGCTTTGCCTAAACCT

Downstream 100 bases:

>100_bases
CCCCCGTGGGATCCAGCACCTTGCCCCGTTCCACCTCGGCATAGACCAGGTAGCGATCCCCGCAGTCCATCCAAGTTTTC
ACACGGCACTCCAGGTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTSYTALPELRCTFAGRSIVPDI
AVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRVIDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGD
RQLKVIDGIQLALTPQQIFVLQYTTPAAWP

Sequences:

>Translated_190_residues
MTTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTSYTALPELRCTFAGRSIVPDI
AVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRVIDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGD
RQLKVIDGIQLALTPQQIFVLQYTTPAAWP
>Mature_189_residues
TTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTSYTALPELRCTFAGRSIVPDIA
VIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRVIDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGDR
QLKVIDGIQLALTPQQIFVLQYTTPAAWP

Specific function: Unknown

COG id: COG4636

COG function: function code S; Uncharacterized protein conserved in cyanobacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21399; Mature: 21268

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTS
CCCEEEEEEEHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
YTALPELRCTFAGRSIVPDIAVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRV
EEECCCEEEEECCCCCCCCCEEEEECEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
IDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGDRQLKVIDGIQLALTPQQIFV
HHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCHHHCCCCEEEEECCEEEEECCCEEEE
LQYTTPAAWP
EEECCCCCCC
>Mature Secondary Structure 
TTRLDLALTLEDFLKLPHIEESPAWEYVDGVAIQKPLPKVRHSILQKRLVAEVDGSTTS
CCEEEEEEEHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
YTALPELRCTFAGRSIVPDIAVIAWDRIRLSETGEPEDDFTAAPDWIIEILSPGQRVSRV
EEECCCEEEEECCCCCCCCCEEEEECEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
IDNILHCLKHGSKLGWMVDLDDYSVLIFAPQQEPEICRGDRQLKVIDGIQLALTPQQIFV
HHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCHHHCCCCEEEEECCEEEEECCCEEEE
LQYTTPAAWP
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA