| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609176
Identifier: 86609176
GI number: 86609176
Start: 1797699
End: 1798208
Strand: Direct
Name: 86609176
Synonym: CYB_1716
Alternate gene names: NA
Gene position: 1797699-1798208 (Clockwise)
Preceding gene: 86609174
Following gene: 86609177
Centisome position: 59.01
GC content: 58.82
Gene sequence:
>510_bases TTGGCAAGGGTTAATCTACAGGTAAGGGATCCCTTCCTCATGCCAGCTTCCCAGTCAACCCCCAACTTGCTCATGGCTCA CGACAGCTACCAAGAAGGCATCGCAGCGGTACAAGCGGGCGATTTCCAGGCTGCCATCCAAGCGTTTCGCCAGGCGGTTG CTGCCGATCCAACCCATACCGAAGCTCGTTACAAGCTGGCCTGGGTACTGGGCATGAGCGGCTATCTGGATCCGGCCCTG ACAGAGCTGGAAGCCGTTTTGGCGGCAGATCCCAACCATGTGGCAGCCCATTACAATCGAGGGGCCCTCCTCTTGCAAAA GGCCCAACTGGAAGCCGATGAGGACGGACAAATCGATCTGGCCGTTCTGCAACAGGCGGAAGCAGCCTTTCAAGCGGTGA TGCGCTTGGATCCCACCGACCAACGGGCCTTTGCCTTCCTCAATTTGGTCAAGCGGGCCATTCGCAACCATCAGGCGTCC ACTCAGGTCTCCGGCGGCAGTGGCGGGTAA
Upstream 100 bases:
>100_bases CTCCTGCTGCAGATGGCACCCCCAAGAGGGAAAAGACGGTAAACCAGCGGGGGCACGGCTCTGTTCTCGGTACCTGGGAT GGGAATTGGGGGCAACACGT
Downstream 100 bases:
>100_bases ATCTGTGGAGGTTGTGGTCGGCTGGTGATTGCACAGCCTGAAGCCCATTGCGTAACATAAGTAAAGCCTGGGGATCCCGG CAATTTGGAGAGGTGTCCGA
Product: TPR domain-containing protein
Products: NA
Alternate protein names: TPR Domain-Containing Protein
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHTEARYKLAWVLGMSGYLDPAL TELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDLAVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQAS TQVSGGSGG
Sequences:
>Translated_169_residues MARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHTEARYKLAWVLGMSGYLDPAL TELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDLAVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQAS TQVSGGSGG >Mature_168_residues ARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHTEARYKLAWVLGMSGYLDPALT ELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDLAVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQAST QVSGGSGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18211; Mature: 18080
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHT CCEEEEEECCCEECCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC EARYKLAWVLGMSGYLDPALTELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDL CHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCHH AVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQASTQVSGGSGG HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure ARVNLQVRDPFLMPASQSTPNLLMAHDSYQEGIAAVQAGDFQAAIQAFRQAVAADPTHT CEEEEEECCCEECCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC EARYKLAWVLGMSGYLDPALTELEAVLAADPNHVAAHYNRGALLLQKAQLEADEDGQIDL CHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCHH AVLQQAEAAFQAVMRLDPTDQRAFAFLNLVKRAIRNHQASTQVSGGSGG HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA