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The map label for this gene is ydcM [C]

Identifier: 86609148

GI number: 86609148

Start: 1763451

End: 1764623

Strand: Direct

Name: ydcM [C]

Synonym: CYB_1688

Alternate gene names: 86609148

Gene position: 1763451-1764623 (Clockwise)

Preceding gene: 86609146

Following gene: 86609149

Centisome position: 57.88

GC content: 55.41

Gene sequence:

>1173_bases
ATGACCCAAGTCCTGACTGTAGCTTGCAAACTCAAGGTGTCCCAGTCGCAAGCCGCCAAATTGGACGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAATCTAGCCCAGCAGGTCTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCGGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGACGCACGTATCTTTTCATTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTTGATGGAAGAGAACGCTTTGAGCTAGCCATTGGCAACTACCAGAGGG
GAATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCGGAAGGACGGCTCCTACTCCATCCAGATTTGTGTC
GAGGCAGAGCCCCCCAAGCAACAGAACACCGACAAGGTGATTGGTGTTGACCTGGGACGGCGAGACATTGCACATACCTC
CGAAGGAGACAACTGGAATGGACAGCAGCTGAACAAAGTCCGAGATCACTACTGTCGGTTAAGAGCGTCTCTTCAGCGCA
AGGCCAGTAAGGGCACCCGCAGTTGCAGGCGGCGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAGGGAGAGACGCTTT
CAAGCTTGGGTGAACCACAGTATCGCTAAGCGCATCGTTAAAGCAGCTCAATCTCTTTCTGCCTGCATTGCCATTGAGGA
CTTAAGCGGCATTCGAGAACGCACCAATCAACACCCCCGCAGTCGTGAGGAGCGGCGGCGTAGCAATAGCTGGGCGTTCT
ACCAGCTGCGGCGGTTTATCGAATACAAGGCTGTGAGGGCGGGTGTCAAAGTGGTAGCTGTCCCTGCGGCCTATACCTCG
CAGATCTGCCACAAGTGCCTGCATATTCATCCCGACTCCGCTCAATCCTATCGCAAGGGTAAGCAGTTCAAATGCGGGCA
CTGCGGTTGGGAAGGGGATGCGGATTTGAATGGTGCGAAGGTGATTGCGCTTTTGGGGGCTGCTGTAAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTGCCGAAAGCCCGCCCTGTACTGA

Upstream 100 bases:

>100_bases
CAGGGAGAGCGCTTAGAGTAGATCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAAGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
GAAGCAGTCAGGGTCGGGTAGTTTACTGCTCTCTATGAGTTGTCTTTGTTGTTCTCGGGTGTAAGCCTGTGAGCCTTGCC
GCCTCTCCCCCCGATACCGA

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICV
EAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGRERRF
QAWVNHSIAKRIVKAAQSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADLNGAKVIALLGAAVNQPRGSWLACQLQGCRKPALY

Sequences:

>Translated_390_residues
MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICV
EAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGRERRF
QAWVNHSIAKRIVKAAQSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADLNGAKVIALLGAAVNQPRGSWLACQLQGCRKPALY
>Mature_389_residues
TQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVE
AEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGRERRFQ
AWVNHSIAKRIVKAAQSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTSQ
ICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADLNGAKVIALLGAAVNQPRGSWLACQLQGCRKPALY

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=228, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44338; Mature: 44207

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGR
CHHEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
RDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGRERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
QAWVNHSIAKRIVKAAQSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADLNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHH
VIALLGAAVNQPRGSWLACQLQGCRKPALY
HHHHHHHHHCCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
TQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGR
CHHEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
RDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGRERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
QAWVNHSIAKRIVKAAQSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADLNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHH
VIALLGAAVNQPRGSWLACQLQGCRKPALY
HHHHHHHHHCCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]