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The map label for this gene is petD [H]

Identifier: 86609092

GI number: 86609092

Start: 1700872

End: 1701384

Strand: Direct

Name: petD [H]

Synonym: CYB_1630

Alternate gene names: 86609092

Gene position: 1700872-1701384 (Clockwise)

Preceding gene: 86609091

Following gene: 86609093

Centisome position: 55.83

GC content: 54.39

Gene sequence:

>513_bases
ATGGCCGTCTCAAAACAGGTGATAGCGACCGAGGCCATTACCCGCAAGGTTGATCTAGACAACCCCAAAGTTGTAGCCAA
GCTGAAGAAAAACATGGGCCACATGACCTATGGTGAGCCCGCTTGGCCCAACGATTTGCTCTTTATGTTTCCGGTGGTGA
TCCTGGGCACTATTGGAGTGATCGTTGGCCTGTCAGTCATGGATCCGGCAGGTGTAGGGGAGCCGGCGGATCCCTTTGCT
ACGCCTCTGGAAATTCTGCCGGAATGGTATCTCTACCCCGCCTTCCACATCCTGCGGATTGCTCCCAACAAGCTGTTGGG
AATTGCTCTGATGTCTGCCATTCCTGTGGGTCTCTTGTTTGTGCCCTTCATCGAAAACGTCAACAAGTTCCAAAACCCCT
TGCGCCGCCCAGTGGCGACAACGGTGTTCCTGATCGGCACCTTGGTCACCCTCTACCTGGGCATAGGTGCCACCTTGCCC
TTGGATAAGTGGGTCACCTTGGGCTTGTTCTAA

Upstream 100 bases:

>100_bases
GAGAAAGGTTTGACTCCCAGACGCCTTTGACTTTCCTGGTAACTGGGATCTTTACCTGCCACTTTTTCAGAACTTTTGTC
CCTAGATAAGGAGAACTCCC

Downstream 100 bases:

>100_bases
AAGAACATCTGGGACTCCCGCTTGATGGGTTGATCGTCATCATCACCATTAGAATCACCATCAGAGTGCAGCAGGTCGGT
GGCCGGGCTGCACTTTCTCT

Product: cytochrome b6-f complex subunit IV

Products: NA

Alternate protein names: 17 kDa polypeptide [H]

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MAVSKQVIATEAITRKVDLDNPKVVAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTIGVIVGLSVMDPAGVGEPADPFA
TPLEILPEWYLYPAFHILRIAPNKLLGIALMSAIPVGLLFVPFIENVNKFQNPLRRPVATTVFLIGTLVTLYLGIGATLP
LDKWVTLGLF

Sequences:

>Translated_170_residues
MAVSKQVIATEAITRKVDLDNPKVVAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTIGVIVGLSVMDPAGVGEPADPFA
TPLEILPEWYLYPAFHILRIAPNKLLGIALMSAIPVGLLFVPFIENVNKFQNPLRRPVATTVFLIGTLVTLYLGIGATLP
LDKWVTLGLF
>Mature_169_residues
AVSKQVIATEAITRKVDLDNPKVVAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTIGVIVGLSVMDPAGVGEPADPFAT
PLEILPEWYLYPAFHILRIAPNKLLGIALMSAIPVGLLFVPFIENVNKFQNPLRRPVATTVFLIGTLVTLYLGIGATLPL
DKWVTLGLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870 [H]

Pfam domain/function: PF00032 Cytochrom_B_C [H]

EC number: NA

Molecular weight: Translated: 18550; Mature: 18418

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSKQVIATEAITRKVDLDNPKVVAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTIGV
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IVGLSVMDPAGVGEPADPFATPLEILPEWYLYPAFHILRIAPNKLLGIALMSAIPVGLLF
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VPFIENVNKFQNPLRRPVATTVFLIGTLVTLYLGIGATLPLDKWVTLGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
AVSKQVIATEAITRKVDLDNPKVVAKLKKNMGHMTYGEPAWPNDLLFMFPVVILGTIGV
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IVGLSVMDPAGVGEPADPFATPLEILPEWYLYPAFHILRIAPNKLLGIALMSAIPVGLLF
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VPFIENVNKFQNPLRRPVATTVFLIGTLVTLYLGIGATLPLDKWVTLGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA