| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is hspA [H]
Identifier: 86609054
GI number: 86609054
Start: 1660866
End: 1661306
Strand: Direct
Name: hspA [H]
Synonym: CYB_1589
Alternate gene names: 86609054
Gene position: 1660866-1661306 (Clockwise)
Preceding gene: 86609053
Following gene: 86609055
Centisome position: 54.51
GC content: 55.56
Gene sequence:
>441_bases ATGGCTCTTGTCCGCTGGGATCCGTTTCGTGAAATTGACGAAATTCAACGGGAAATGAACCGGATGTTCGACCGGCTGAT CCCTCGCACCACCGAGGCCGACGGCTTTGCCTTCATGCCGGCAGTGGAGATGCACGATGATCCCGAAACCATTACCCTGA AGCTGGAGCTGCCCGGCTTGAACCCCAACGACTTGGATATCCAAGCGACAGCCGAAGCGGTCTCCATCACCGGGGAACGG CGATTTGAGAAGCGCTCTGAAGACAAAGGGGTAACCCGGACTGAATTCCGTTATGGGCGCTTCCAACGGGTGATCCCGCT GCCGAACCGGATCAAACACGATCAAGTGAAAGCCGAATACAAAGATGGGATCCTCACCCTCACCTTGCCCAAGGCAGACT CTGAAAAAGCCCAAGTGGTCAAAGTGAGCGTTGTCTCCTGA
Upstream 100 bases:
>100_bases AGAGGTTTTGCTTATACCTCTAAAGTTGAGCCCCGAAAGCTAAGCTAAAAACTCGAACTGGAAGTCAAAAAAGCAAAGTA ATAGAGGAGGAGGATGCTCT
Downstream 100 bases:
>100_bases TGGCCTAGAGGTTAGGCAACTTCCTAATAGGGAAAAAGGATCCCATAGAGGTAGGCGATGAGCCTACCTTTTTTTACATT TCGGTTCAAGATTCCATGGC
Product: small heat shock protein (HSP20) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MALVRWDPFREIDEIQREMNRMFDRLIPRTTEADGFAFMPAVEMHDDPETITLKLELPGLNPNDLDIQATAEAVSITGER RFEKRSEDKGVTRTEFRYGRFQRVIPLPNRIKHDQVKAEYKDGILTLTLPKADSEKAQVVKVSVVS
Sequences:
>Translated_146_residues MALVRWDPFREIDEIQREMNRMFDRLIPRTTEADGFAFMPAVEMHDDPETITLKLELPGLNPNDLDIQATAEAVSITGER RFEKRSEDKGVTRTEFRYGRFQRVIPLPNRIKHDQVKAEYKDGILTLTLPKADSEKAQVVKVSVVS >Mature_145_residues ALVRWDPFREIDEIQREMNRMFDRLIPRTTEADGFAFMPAVEMHDDPETITLKLELPGLNPNDLDIQATAEAVSITGERR FEKRSEDKGVTRTEFRYGRFQRVIPLPNRIKHDQVKAEYKDGILTLTLPKADSEKAQVVKVSVVS
Specific function: May stabilize cellular components during stress and spore formation [H]
COG id: COG0071
COG function: function code O; Molecular chaperone (small heat shock protein)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the small heat shock protein (HSP20) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002068 - InterPro: IPR008978 [H]
Pfam domain/function: PF00011 HSP20 [H]
EC number: NA
Molecular weight: Translated: 16844; Mature: 16713
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS01031 HSP20
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALVRWDPFREIDEIQREMNRMFDRLIPRTTEADGFAFMPAVEMHDDPETITLKLELPGL CCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECEEECCCCCCEEEEEEEECCC NPNDLDIQATAEAVSITGERRFEKRSEDKGVTRTEFRYGRFQRVIPLPNRIKHDQVKAEY CCCCCEEEEECCEEEECCHHHHHHCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHHH KDGILTLTLPKADSEKAQVVKVSVVS CCCEEEEEECCCCCCCEEEEEEEECC >Mature Secondary Structure ALVRWDPFREIDEIQREMNRMFDRLIPRTTEADGFAFMPAVEMHDDPETITLKLELPGL CEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECEEECCCCCCEEEEEEEECCC NPNDLDIQATAEAVSITGERRFEKRSEDKGVTRTEFRYGRFQRVIPLPNRIKHDQVKAEY CCCCCEEEEECCEEEECCHHHHHHCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHHH KDGILTLTLPKADSEKAQVVKVSVVS CCCEEEEEECCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226695; 8423161 [H]