Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609018

Identifier: 86609018

GI number: 86609018

Start: 1627420

End: 1628604

Strand: Direct

Name: 86609018

Synonym: CYB_1554

Alternate gene names: NA

Gene position: 1627420-1628604 (Clockwise)

Preceding gene: 86609016

Following gene: 86609020

Centisome position: 53.42

GC content: 62.95

Gene sequence:

>1185_bases
ATGGCCAACTACGACTGGATTCTGATCGGCGGTGGGATTACCGGGGCAGCCCTAAGCTATGAACTGGCCCGCCAGGGGGG
ATCCGTTCTGCTGATGGAGAAAGATGGAGTGCTGAACGGAGCAACCCGCTACAGCTACGGGGGCTTGGCCCATTGGGCGG
GCAAAACGCCGCTGCTCAAAGCTCTGGGGGAAGAAGGGATCCAACGCTACCGCACCCTGTCAGAAGAGCTGGAGGCAGAT
ATTCAATTTCGCGAGCTGGATCTGCTCATGCCCATTGCCCCCGGCTACGATGCAGAGGCCGTTGAGGCGGATCTGGCCGA
CTGTCGCATCCCACCCCGGCGGATTTCGGTGGCGGCAGCCTGCGAGCTGGAGCCGCTGCTGGATCCGGCCGCTCTGGAAG
TAGTCCTCTGGGCTCGGCATGGCCACATCAACCCCTTGTTGACGGCGCTGGCCTTTCAAACAGCCTTGCAACGATTGGGG
GGATCCCTCTTGATCGCAACAGCAACGGCCCTGCGGCGGCAGGGAGCGCGCATCACGGGCGTAGAGTCCGGAGCCGACTG
CTACGGAGCAGGCCAGGTGGTGGTGTGCGCCGGCGGCTGGACACGGGCTCTGTTGCGCCAAGCGGGAATCCGGGTGCCCA
TCTACTACACCCATGCCGAATCCCTGGAGCTGGAGCCCTCGGATTTGCAATTGAAAGCGTTGGTGATGAGCGTGCCCGTG
CAACGCTTGGAACTGGAACGACAAGCCGCCCATCCCGATCGGGATCCCCTTTGGGACGAGCCAGGGCACGAGCTTTGCCC
GCCGATTCTGGATGCCGGGATCCTGCAATTTGTAGATGGCAGCATTCGCATGGGCCAGATCAGCCGGGTATTGACGGATC
CCCATGCCGAGGTGGATGCAGCCGCCAGCGAAGCCCAGATCCGGGCACAAGCCGGTCGCTACCTGCCCAAGTTGGCCCAC
CTGCCCGGACGGTGGTATCACTGCTTGGTGGCCTTCAGCGCTGATCACCAGCCTCTGGTGGGATCCCTGCCCGGCTGGGA
AGGCTTGCAACTGTTTTCCGGCTTCAGCAACCCCCTGCCCATCGTGCCCGCTTTGGCCCGTCGCTTCGCCCAACAAGCCT
ATGGACAGGCGGATGAATGGATCCCTGCTCTGTCGCCGGGGCGGTTTGCCCAGGTTTTGAGTTGA

Upstream 100 bases:

>100_bases
GCCAGTACCGCCACCAGTGCGGATCCGAGTTCTGCTGCGCTCGCTACCCCAAACTGAGCCTCTTTGCCGCAAGATGAGGT
TCAGGGCAAAGAGGGAAGTG

Downstream 100 bases:

>100_bases
TGCCTTGCCTATTCTCGATGACCATCGCCAACAAGTCTGGAATACGGCTATCCCGTCTGCAGCATAATGAAAGCCGGAAG
TTCTCTGCGTCGGATCTATG

Product: oxidoreductase FAD-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLKALGEEGIQRYRTLSEELEAD
IQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAACELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLG
GSLLIATATALRRQGARITGVESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV
QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDAAASEAQIRAQAGRYLPKLAH
LPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLPIVPALARRFAQQAYGQADEWIPALSPGRFAQVLS

Sequences:

>Translated_394_residues
MANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLKALGEEGIQRYRTLSEELEAD
IQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAACELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLG
GSLLIATATALRRQGARITGVESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV
QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDAAASEAQIRAQAGRYLPKLAH
LPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLPIVPALARRFAQQAYGQADEWIPALSPGRFAQVLS
>Mature_393_residues
ANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLKALGEEGIQRYRTLSEELEADI
QFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAACELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLGG
SLLIATATALRRQGARITGVESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPVQ
RLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDAAASEAQIRAQAGRYLPKLAHL
PGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLPIVPALARRFAQQAYGQADEWIPALSPGRFAQVLS

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42620; Mature: 42489

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLK
CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHH
ALGEEGIQRYRTLSEELEADIQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAA
HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEEEE
CELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLGGSLLIATATALRRQGARITG
ECCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCEEEE
VESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV
CCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCH
QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDA
HHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH
AASEAQIRAQAGRYLPKLAHLPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLP
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCC
IVPALARRFAQQAYGQADEWIPALSPGRFAQVLS
HHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHCC
>Mature Secondary Structure 
ANYDWILIGGGITGAALSYELARQGGSVLLMEKDGVLNGATRYSYGGLAHWAGKTPLLK
CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHH
ALGEEGIQRYRTLSEELEADIQFRELDLLMPIAPGYDAEAVEADLADCRIPPRRISVAAA
HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEEEE
CELEPLLDPAALEVVLWARHGHINPLLTALAFQTALQRLGGSLLIATATALRRQGARITG
ECCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCEEEE
VESGADCYGAGQVVVCAGGWTRALLRQAGIRVPIYYTHAESLELEPSDLQLKALVMSVPV
CCCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCH
QRLELERQAAHPDRDPLWDEPGHELCPPILDAGILQFVDGSIRMGQISRVLTDPHAEVDA
HHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH
AASEAQIRAQAGRYLPKLAHLPGRWYHCLVAFSADHQPLVGSLPGWEGLQLFSGFSNPLP
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCC
IVPALARRFAQQAYGQADEWIPALSPGRFAQVLS
HHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA