Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609012

Identifier: 86609012

GI number: 86609012

Start: 1622493

End: 1623155

Strand: Reverse

Name: 86609012

Synonym: CYB_1547

Alternate gene names: NA

Gene position: 1623155-1622493 (Counterclockwise)

Preceding gene: 86609013

Following gene: 86609010

Centisome position: 53.28

GC content: 52.19

Gene sequence:

>663_bases
ATGGGGTTGCTTATTTTTATCTTGTTTTTAGCTCTGGCTGCCGGGATCTTGGCTCTAGCCCTTTACCACGAAAAGAAACG
TCGAGAAGCTCTGGAACGGGTAGCTGCACAGCTAGGAATGCGCTTTTCTGCCCAGTTGCCTGAAGAGATTCGATCTCGCT
TGTTGCAAGCAGGCTTTGGACTGTTTGAACGAGGCCATGGGCGGCGTTTCTATAATTCGATGTCCAAGCGGCTGATCGAT
GGCACTGAGATTACCGTTTTTGATTACCAATACACCAGCGGCAGTGGCAAGAGTTCTAGCACTTATCGCCAGTCCGTCTT
CTACGCCTATCACGAGGATCTTCATCTGCCCCGTTTTCGGCTGCACCCCGAAAATGCCCTTTTCCATGGCATCGCCAAAG
CTTTTGGCATGCAAGATATCAATTTCGAGAGCCACCCTAAGTTCTCCCGGAGCTATCTCTTGCGAGGAGAGAATGAAGCC
CAAGTTCGGCTGCGGTTCCATCCTGGCGTCCTTGGTTTTTGGGAGCAGCATCCCAACTATTGCGCCGAAGGAGCTGGCGC
CCACCTCATTCTTTGGCAAAATGACCGACAGGTGAGTCCCGAAGGGATGGCAGAATGGATGCACTTGGGGGAAGAGTTGA
CTCAACGGCTGCGGCGTATGTAG

Upstream 100 bases:

>100_bases
GAGACCGCTCGGCTGAATGGTCGAAGGCAGGGATCCTTTTGGAAATCTGCTCAGGTATTGTGGGGATGGGCGCTGCAGTC
TGTAAGCCGAGGGAGACGGT

Downstream 100 bases:

>100_bases
TAGCAGAGCCTACGGCCCCCCGCCGCGAACGGTCAACCTCGGCCTAAACCTCACCCCAAGAGGGTGCGCTGCAATCTCAA
GAACCTCTCTACTGAGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGLLIFILFLALAAGILALALYHEKKRREALERVAAQLGMRFSAQLPEEIRSRLLQAGFGLFERGHGRRFYNSMSKRLID
GTEITVFDYQYTSGSGKSSSTYRQSVFYAYHEDLHLPRFRLHPENALFHGIAKAFGMQDINFESHPKFSRSYLLRGENEA
QVRLRFHPGVLGFWEQHPNYCAEGAGAHLILWQNDRQVSPEGMAEWMHLGEELTQRLRRM

Sequences:

>Translated_220_residues
MGLLIFILFLALAAGILALALYHEKKRREALERVAAQLGMRFSAQLPEEIRSRLLQAGFGLFERGHGRRFYNSMSKRLID
GTEITVFDYQYTSGSGKSSSTYRQSVFYAYHEDLHLPRFRLHPENALFHGIAKAFGMQDINFESHPKFSRSYLLRGENEA
QVRLRFHPGVLGFWEQHPNYCAEGAGAHLILWQNDRQVSPEGMAEWMHLGEELTQRLRRM
>Mature_219_residues
GLLIFILFLALAAGILALALYHEKKRREALERVAAQLGMRFSAQLPEEIRSRLLQAGFGLFERGHGRRFYNSMSKRLIDG
TEITVFDYQYTSGSGKSSSTYRQSVFYAYHEDLHLPRFRLHPENALFHGIAKAFGMQDINFESHPKFSRSYLLRGENEAQ
VRLRFHPGVLGFWEQHPNYCAEGAGAHLILWQNDRQVSPEGMAEWMHLGEELTQRLRRM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25447; Mature: 25315

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLIFILFLALAAGILALALYHEKKRREALERVAAQLGMRFSAQLPEEIRSRLLQAGFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH
LFERGHGRRFYNSMSKRLIDGTEITVFDYQYTSGSGKSSSTYRQSVFYAYHEDLHLPRFR
HHHCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
LHPENALFHGIAKAFGMQDINFESHPKFSRSYLLRGENEAQVRLRFHPGVLGFWEQHPNY
ECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCEEHHHHCCCCH
CAEGAGAHLILWQNDRQVSPEGMAEWMHLGEELTQRLRRM
HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLLIFILFLALAAGILALALYHEKKRREALERVAAQLGMRFSAQLPEEIRSRLLQAGFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH
LFERGHGRRFYNSMSKRLIDGTEITVFDYQYTSGSGKSSSTYRQSVFYAYHEDLHLPRFR
HHHCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE
LHPENALFHGIAKAFGMQDINFESHPKFSRSYLLRGENEAQVRLRFHPGVLGFWEQHPNY
ECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCEEHHHHCCCCH
CAEGAGAHLILWQNDRQVSPEGMAEWMHLGEELTQRLRRM
HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA